RetrogeneDB ID: | retro_etel_1134 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_216282:19877..20490(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SERPINB6 | ||
Ensembl ID: | ENSETEG00000012630 | ||
Aliases: | None | ||
Description: | serpin peptidase inhibitor, clade B (ovalbumin), member 6 [Source:HGNC Symbol;Acc:8950] |
Percent Identity: | 52.15 % |
Parental protein coverage: | 63.47 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | EKSREHINSWVAEKTEGKITESLSSDSVDSCTKLIL-VNAIYFKGKWDKPFSKASTRKSTFKINQVX-EK |
E..R.HIN.WVA.KTE.KITE....D.VDS.T.L.L.VNAIYFKG.W.....K..T....FK.NQ...EK | |
Retrocopy | EEFRKHINTWVAKKTENKITECPCPDTVDSRTNLLLLVNAIYFKGTWNHQLNKKHTKERLFK-NQQG>EK |
Parental | PIQMMFQESMVKLTYVQEISTQILMLPYVGRELNMIIMLPDENIDLKMVENELTYERFLEWTRDDKMDTR |
..QMMF..S....TY..E..TQIL.LP.V..E.N.IIMLPDE..D....E..LTYE...EWTR.D..... | |
Retrocopy | LVQMMFKKSTF*MTYLGEKFTQILVLPNVKKEPNAIIMLPDEDADWSTLEEDLTYEKLTEWTRPDPEEEE |
Parental | EVDVFLPRFKLEESYDLENS-LPTLGMVDAFDEARADFSGMSPKRDLFVSKVAHKAF-VEVNEEGTEAA |
E.DVFLPRF..EE..D.E.S.L..LGM..AFD...ADF..........V...A...F.VE..EEGTEAA | |
Retrocopy | EIDVFLPRFGAEER*DVEKS<LRSLGMPEAFDQGKADFRNIVQEKPASVQACA-QSF>VEIHEEGTEAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000017483 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000012630 | 1 retrocopy |
retro_etel_1134 ,
|
Monodelphis domestica | ENSMODG00000005468 | 2 retrocopies | |
Mus musculus | ENSMUSG00000060147 | 2 retrocopies |