RetrogeneDB ID: retro_etel_1313

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_245384:2621..2906(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSETEG00000016259
• Aliases: None
• Description: None

Sequence

>retro_etel_1313
ATGGAGGGCGGCTTCGGCTCAGATTTCGGGAACTCCAGGGGTGGGAAACTGGACCCCGGTGTCATCATGGAGCAGGTGAA
AGTACAGATTGCCGTAGCCAACTCGCAGGAGTTGCTACAGAGGATGACGGACAAGTGCTTCCGGAAGTGCATAGGAAAGC
CAGGGGGCTCCTTGGATAATTCTGAGCAGAAGTGCATCGCCATGTGCATGGACCGCTACATGGACGCCTGGAACACGGTA
ACCCGTGCCTACAACTCGCGGTTGCAGCGTGAGCGGGCCAACATG

Alignment

ORF - retro_etel_1313 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.84 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MEGGFGSDFGNSGGGKLDPGVIMEQVKVQIAVANAQELLQRMTDKCFRKCIGKPGGSLDNSEQKCIAMCM
          MEGGFGSDFGNS.GGKLDPGVIMEQVKVQIAVAN.QELLQRMTDKCFRKCIGKPGGSLDNSEQKCIAMCM
Retrocopy MEGGFGSDFGNSRGGKLDPGVIMEQVKVQIAVANSQELLQRMTDKCFRKCIGKPGGSLDNSEQKCIAMCM

Parental  DRYMDAWNTVSRAYNSRLQRERANM
          DRYMDAWNTV.RAYNSRLQRERANM
Retrocopy DRYMDAWNTVTRAYNSRLQRERANM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_1313 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000016259	2 retrocopies	retro_etel_1313 , retro_etel_49,
Otolemur garnettii	ENSOGAG00000013643	1 retrocopy	retro_ogar_1157,
Pteropus vampyrus	ENSPVAG00000000073	1 retrocopy	retro_pvam_156,