RetrogeneDB ID: retro_etel_1444

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_267138:4856..5170(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RALYL
• Ensembl ID: ENSETEG00000014028
• Aliases: None
• Description: RALY RNA binding protein-like [Source:HGNC Symbol;Acc:27036]

Sequence

>retro_etel_1444
CAGAGACCATACGGATCCAAACCTGGAAACAAAAGGACCTTTCAGCACTTTGTAGATTTGAATTCAATGAGCCTTTCCTG
TCTGTTGGTGGTTATGTCTTTGATCATGATTACTACAGAGATAATTTCTACTGTCAGTTATTTGATTACCAAGAGTGCTT
CCCTCTACCTCCCCATATTGTAAGTCCAATGATGTGCAGTGTAAAGTCACTGAGAGTGACTGTAGCAATTCACAGTAGAG
GAAAAGGAATAATTTTTTTTTTAATGAAAGGAGGATCAAGATTTACTGTCGGTGGGTCTTCGTCAGGGTCTAAA

Alignment

ORF - retro_etel_1444 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.81 %
• Parental protein coverage: 52.36 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  EKPYRPKLANKRP-LSALYRLESKEPFLSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPL----K
          ..PY..K..NKR..LSAL.R.E..EPFLSVGGYVFD.DYYRD.FY..LFDY....P.PP..V.P.....K
Retrocopy QRPYGSKPGNKRT<LSALCRFEFNEPFLSVGGYVFDHDYYRDNFYCQLFDYQECFPLPPHIVSPMMCSVK

Parental  RPRVTVTTTRRGKGV--FSMKGGSRSTVSGSSSSGSK
          ..RVTV....RGKG.....MKGGSR.TV.G.SSSGSK
Retrocopy SLRVTVAIHSRGKGIXXXXMKGGSRFTV-GGSSSGSK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_1444 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000014028	1 retrocopy	retro_etel_1444 ,