RetrogeneDB ID: | retro_etel_1567 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_279346:79051..79455(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HINT3 | ||
Ensembl ID: | ENSETEG00000007350 | ||
Aliases: | None | ||
Description: | histidine triad nucleotide binding protein 3 [Source:HGNC Symbol;Acc:18468] |
Percent Identity: | 72.79 % |
Parental protein coverage: | 73.63 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MAEEPSRHATQPDLTRETAAADKPTRSPTRPSAVAAESPAPADCDSKCVFCRIA-RGQEPSTEL-LPCEN |
MA.EPS.H..QPDL..ETAA..KP.RSP...S.V.AES..P.D.DSKC.FC.IA.RG........LPCEN | |
Retrocopy | MAKEPSLHSAQPDLNPETAASAKPKRSPMQSSVVTAESLVPMDHDSKCMFCWIA>RGRNQALNF>LPCEN |
Parental | EDLVCFKDIKPAAPHHYLVVPKKHIGNCKDLEKAHLELVENMVAVGKAILERNNFTDLKNARMGFH |
EDL.CFKDIKPAAPHHYLVVPKK.IGNCKDLEKAH.E.VEN..AVGKAIL.RNNFTDLKN.RMGFH | |
Retrocopy | EDLLCFKDIKPAAPHHYLVVPKKPIGNCKDLEKAHIEWVENLLAVGKAILQRNNFTDLKNVRMGFH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000001830 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000003710 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000021856 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007350 | 1 retrocopy |
retro_etel_1567 ,
|
Macropus eugenii | ENSMEUG00000007627 | 1 retrocopy | |
Mus musculus | ENSMUSG00000019791 | 1 retrocopy |