RetrogeneDB ID: | retro_etel_1701 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_288242:56031..56490(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZNHIT1 | ||
Ensembl ID: | ENSETEG00000010174 | ||
Aliases: | None | ||
Description: | zinc finger, HIT-type containing 1 [Source:HGNC Symbol;Acc:21688] |
Percent Identity: | 60.26 % |
Parental protein coverage: | 98.7 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | EKKASFRSQDPGQRRVLDRAARQRRINRQLEALENDNFQDDPHAGLPQLGKRLPQFDDDTDTGKKKKKTR |
E...S..SQD..Q...LD..A.QR.I.RQL.ALE...FQ...HAGLPQL..RL.Q.D.D.D..KKK.KT. | |
Retrocopy | EEITSASSQDTRQWWMLDLVATQRSIKRQLAALEKGGFQENRHAGLPQLNERLSQLDADRDARKKKEKT* |
Parental | GDHFKLR--FRKN-FQALLEEQNLSVAEGPNYLTACAGPPSRPQRPFCAVCGFPSPYTCVSCGARYCTV- |
.DHFKL...FRKN..QALL.EQNL.V....NY.TAC...PSR...PFCAV.GFPSPYTCVSCGA.YCT.. | |
Retrocopy | -DHFKLLLYFRKN>YQALLKEQNLRVVK*TNYPTACVRSPSRTHGPFCAVSGFPSPYTCVSCGAWYCTM< |
Parental | RCLGTHQETRCLKWTV |
.CLGT.Q...C.KWT. | |
Retrocopy | VCLGTQQASGCMKWTL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000010174 | 1 retrocopy |
retro_etel_1701 ,
|
Homo sapiens | ENSG00000106400 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000016713 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006951 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000019525 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000001418 | 2 retrocopies |