RetrogeneDB ID: retro_etel_1740

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_291229:8361..8978(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ENDOV
• Ensembl ID: ENSETEG00000014048
• Aliases: None
• Description: endonuclease V [Source:HGNC Symbol;Acc:26640]

Sequence

>retro_etel_1740
AGGGTGGTGTATGAGGAGTGTCGCTTGGTGAACTTGAAGGCCCCATATGTGTCTGGCTTCCTGACCTTCTGAGAGGTGTC
TTTCCTGGTGCAGGCCTTGCATCGGCTGTGAGAGAAGGAGCGCAGCCTCGTGCCCCAGGTTCTTCTTGTGGTTGGAAACG
GGGTGCTCCACTATGAGGCTTTGGGGTGACCTGCTACCTCAGTGTTATCGCAGACTTGCCCTATGGCGGGTGTTCAAGAT
GCTCCTGCAGGGGACTGGCTAGAGAAATGTGACCAGCACAAGAAGATCAGATGCTGTGCACTGGCAGAGACACATTTCCC
CTGGTGGGGGCTCCAGGCCATCCTGGGAATGGCCCTGAAGAGCCATGACCACAGCATCAATCCCCCATATGTCTCTGGGG
GCACAAGATAAGCCTGGAGGCCGCAGTGTGCCTGACTCGGGCCTCCTGCAGGTTCTAGTTCCCCCTGCTAGTGCCTCAGG
CAGACATTCACTCCTGAAAGTACATTGGTGGGAGCCAGGAGCCAGGTGCTCTCCCTCTGGACTGCTCAGAGCAGGAGAGA
CCCCTGAAGGCAAAGCAGCCAGAAGTGTGCCCTCCAGGAGGTTCAGGGGAGCTCACA

Alignment

ORF - retro_etel_1740 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.04 %
• Parental protein coverage: 73.85 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  KVVYEECRMVNLKAPYVSGFLAFREVPFLAEAVQRLQEKEPSLMPQASVLLVDGNGVLHQR-GFGVACHL
          .VVYEECR.VNLKAPYVSGFL.F.EV.FL..A..RL.EKE.SL.PQ..VLLV.GNGVLH...GFGV.C.L
Retrocopy RVVYEECRLVNLKAPYVSGFLTF*EVSFLVQALHRL*EKERSLVPQ--VLLVVGNGVLHYE<GFGVTCYL

Parental  GILTDLLCVG-VAKKLLQVDG-LEKSDQHKEKVRCLRAAGATFPLVGDSGTILGMALKSHNRSINPLYVS
          ....DL...G.V.K.LLQ..G.LEK.DQHK.K.RC...A...FP..G....ILGMALKSH..SINP.YVS
Retrocopy SVIADLPYGG<VFKMLLQGTG<LEKCDQHK-KIRCCALAETHFPWWGLQA-ILGMALKSHDHSINPPYVS

Parental  V-GHKISLETAVHLTHACCRFRIPEPVRQADIRSREYIRRNQGLPGAPALG---QERTLKAQWQEVCPPG
          ..GHKISLE.AV.LT.A.CRF..P..V.QADI.S..YI...Q..PGA..L....QER.LKA...EVCPPG
Retrocopy G<GHKISLEAAVCLTRASCRF*FPLLVPQADIHS*KYIGGSQE-PGALPLDCSEQERPLKAKQPEVCPPG

Parental  GSAEPT
          GS.E.T
Retrocopy GSGELT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_1740 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000014048	1 retrocopy	retro_etel_1740 ,