>retro_etel_1829
GAAAAACTAGGCATGGAACCTCTCAATATCTTTGCCGGAACTGACTGCTTTGCCATCTATAAAGCAGGGCCAGTGCTGTG
CGTCAACCATGGTATGGGCACACCTCCCATTGGAAGCATGCAGTATGAGCTCACCAAGCTACTGTACCATGCCAGGAGCT
TCCAAGTCACCATCAGCACATCAGGTCTGGAGCCTGGCTCTGTGGTTATCACCCAACAAATGGTGCGTGCCTGCTTCAAG
CCTGAGTTTGAGCAGATTGCCCTGGGGAAGTGAGTTGTTCAAAGCACACACCTCAATAACCAGCTAGTTCAGGAGCTGAT
GCAGTAGTCCCAACAGCTAGACAAACTCCCCGTGGTTGTGGGGAACACCATGTACACCTTGGATTTCTCTGAAGGGCAAG
GCCATTTGCAGGGTGCTCCTGTTCGTATACCGAAAAGGCCAAGCAACAGTGCTTGAGGGCAGCCTGCGCCGTTGGCATCC
GGAGCATTGAGGTGGAGTCCTCAGTCTTTGCTGCCATGTGTGGTGCTTGTGACCTCTGAGCGGCTGTGGTGTGTGCCACC
CTTCTCAATTGGTTAGATGGAGACCAGATCAATAGCACC
ORF - retro_etel_1829 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
69.57 % |
Parental protein coverage: |
71.03 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | EEPGVEPVNICAGTDRYAMYKVGPVLSVSHGMGIPSIAIMLHELIKLLYHARCSNITIIRIGTSGGIGLE |
| E..G.EP.NI.AGTD..A.YK.GPVL.V.HGMG.P.I..M..EL.KLLYHAR....TI....TSG...LE |
Retrocopy | EKLGMEPLNIFAGTDCFAIYKAGPVLCVNHGMGTPPIGSMQYELTKLLYHARSFQVTI---STSG---LE |
|
Parental | PGSVVISQQAVDACFKPEFEQIILGKRVVRSTHLNNQLVQELLLCSTELDEFPVVVGNTMCTLDFYEGQG |
| PGSVVI.QQ.V.ACFKPEFEQI.LGK.VV.STHLNNQLVQEL...S..LD..PVVVGNTM.TLDF.EGQG |
Retrocopy | PGSVVITQQMVRACFKPEFEQIALGK*VVQSTHLNNQLVQELMQ*SQQLDKLPVVVGNTMYTLDFSEGQG |
|
Parental | RLDGA-LCSYTEKDKQQYLKAAYAVGIRNIEMESSVFAAMCASSNLRAAVVCVTLLNRLDGDQITSS |
| .L.GA..CSYTEK.KQQ.L.AA.AVGIR.IE.ESSVFAAMC....L.AAVVC.TLLN.LDGDQI.S. |
Retrocopy | HLQGA<SCSYTEKAKQQCLRAACAVGIRSIEVESSVFAAMCGACDL*AAVVCATLLNWLDGDQINST |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_1829 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.