>retro_etel_2063
ATGGCACAGCCCTGGGGCTGGGTGAGAAGACACTTCAGGGGGTTTTGCAAAGGCTTCTTCGTGGCCGTGCCCATGGCAGT
GACCTTCCTGGACAGCGTCGCCTGCGTGGCACGAGTGGAAGGGGCATCCATGCAGCCCTCGCTGAATCCCGGCGGGAGCC
AGTCGTCCGACGTGGTGCTGCTGAACCACTGGAAAGTGAGGAACCTGCAAGTGCAGCGTGGTGACGTGGTGTCACTGGTG
TCCCCAAGAAACCCAGGACAGAAGATCATCAAGCGAGTGATTGCCCTTGAAGGGGACGTCGTCAGAACCATGGGTCACAG
ACGCCGCTACGTCCAGATCCCCCCGGGTCACATGTGGGTCGAAGGCGATCACCACGGGCACAGTTTTGACAGTAACTCTT
TCGGGCCAGTCTCCCTGGGGCTCCTCCATGCCCACGCCACCCACATCCTGTGGCCCCCACAACGCTGGCAGAGACTGGAG
TCGGTCCTACCACCAGAGCGCCTACCGGTCCAGAGCGCAGAGGAG
ORF - retro_etel_2063 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
84. % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MAQSQSWVKRYFKAFFKGFFVAVPVAVTFLDRVACVARVEGMSMQPSLNPGGSQSSDVVLLNHWKVRNFE |
| MAQ...WV.R.F..F.KGFFVAVP.AVTFLD.VACVARVEG.SMQPSLNPGGSQSSDVVLLNHWKVRN.. |
Retrocopy | MAQPWGWVRRHFRGFCKGFFVAVPMAVTFLDSVACVARVEGASMQPSLNPGGSQSSDVVLLNHWKVRNLQ |
|
Parental | VQRGDIVSLVSPKNPEQKIIKRVIALEGDIVKTMGHKTRYVKVPPGHIWVEGDHHGHSFDSNSFGPVSLG |
| VQRGD.VSLVSP.NP.QKIIKRVIALEGD.V.TMGH..RYV..PPGH.WVEGDHHGHSFDSNSFGPVSLG |
Retrocopy | VQRGDVVSLVSPRNPGQKIIKRVIALEGDVVRTMGHRRRYVQIPPGHMWVEGDHHGHSFDSNSFGPVSLG |
|
Parental | LLHAHATHILWPPERWQKLESFLPPERLPVQSTED |
| LLHAHATHILWPP.RWQ.LES.LPPERLPVQS.E. |
Retrocopy | LLHAHATHILWPPQRWQRLESVLPPERLPVQSAEE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_2063 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
4 retrocopies.