RetrogeneDB ID: | retro_etel_2102 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_59030:336..1110(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDRG3 | ||
Ensembl ID: | ENSETEG00000002250 | ||
Aliases: | None | ||
Description: | NDRG family member 3 [Source:HGNC Symbol;Acc:14462] |
Percent Identity: | 80.68 % |
Parental protein coverage: | 67.7 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | AHGVVHVTIRGILKGNRPVILTYHDIGLNHKSCFNAFFNFEDMQEITQYFAVCHVDAPGQQEGAAPFPTG |
AH.VV.VTIRGI.KGNR.VI.TYHDIGLNHKS.FNAFFNFEDMQE.TQY.AVCHVDAPGQQEGAAPFPT. | |
Retrocopy | AHAVVSVTIRGIRKGNRLVISTYHDIGLNHKSYFNAFFNFEDMQELTQYLAVCHVDAPGQQEGAAPFPTR |
Parental | YQYPTMDELAEMLPSVLTHLSL-KGVIGIGVGAGAYILSRFALNHPELVEGL-VLINVDPCAKGWIDWAA |
YQYPTMDE..EMLPSVLTHLSL.K...G.....G.....RFAL.HPELVE.L.VLIN.DPC.K.WIDWAA | |
Retrocopy | YQYPTMDEWTEMLPSVLTHLSL>KASLGLELELGR----RFALSHPELVECL<VLINADPCVKDWIDWAA |
Parental | SKLFSLTTNVVDIILAHHFGQEELQANMDLIQTYRLHIAQDINQENLQLFLSSYNGRRDLEIERPLLGQN |
SK...LT..VVDIILAHHFGQEELQAN.DLIQTYRLHIAQD.NQENLQLF.SSYNG.RDLEIERPLL.QN | |
Retrocopy | SKIMCLTATVVDIILAHHFGQEELQANVDLIQTYRLHIAQDVNQENLQLFVSSYNGCRDLEIERPLLSQN |
Parental | DNTKTLKCCTLLVVGDSSPAVEAVVECNSRLDPINTTLLKMADCGGLPQVVQPG |
DNTKTL.CC.LLVVGDSSPAV.AVVECNS.LD.IN.TLLKMA.CGGLPQV...G | |
Retrocopy | DNTKTLNCCMLLVVGDSSPAVAAVVECNSCLDLINITLLKMAGCGGLPQVLFVG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012562 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000002250 | 1 retrocopy |
retro_etel_2102 ,
|
Myotis lucifugus | ENSMLUG00000009735 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000895 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000007322 | 5 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000022531 | 1 retrocopy |