>retro_etel_2172
ATGGTGGGTGGCGAGGCGGCCTCGGTGGTGGAGGAACTGGTGTCTGGGGTGCGTCAGGCGGCCGACTTCGCGGAGCAGTT
CCGCGCCTACTCGGAGAGCGAGAAGCAATGGAAGGCCCGGATGGAGTTCATCTTGCGCCACCTGCCAGACTACCGCGATC
CGCCCGACGGCAGCGGCCGCCTGGACCAGCTGCTGTCCCTCTCCATGGTTTGGGCTAACCACCTCTTCTTGGGCTGCAGT
TACAACAAAGACCTTTTAGACAAGGTGATGGAAATGGCTGATGGGATTGAAGTGGAAGATCTGCCACAGTTTACAACCAG
AAGCGAATTAATGAAGAAG
ORF - retro_etel_2172 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
67.83 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MVGGEAASAVEELVSGVRQVVDFFSEQWSCSEREMQKTWISRMRC---HLSNYCNPP--GGHLDQVRSLS |
| MVGGEAAS.VEELVSGVRQ..DF.......SE.E.Q..W..RM.....HL..Y..PP...G.LDQ..SLS |
Retrocopy | MVGGEAASVVEELVSGVRQAADFAEQFRAYSESEKQ--WKARMEFILRHLPDYRDPPDGSGRLDQLLSLS |
|
Parental | MVWTNPLS-DYSYNKDLLDKVMEMADGIEVEDLPQFTTRSELMKK |
| MVW.N.L....SYNKDLLDKVMEMADGIEVEDLPQFTTRSELMKK |
Retrocopy | MVWANHLFLGCSYNKDLLDKVMEMADGIEVEDLPQFTTRSELMKK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_2172 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.