RetrogeneDB ID: | retro_etel_2172 | ||
Retrocopy location | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
| Coordinates: | scaffold_85522:453..792(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | CDKN2AIPNL | ||
| Ensembl ID: | ENSETEG00000006525 | ||
| Aliases: | None | ||
| Description: | CDKN2A interacting protein N-terminal like [Source:HGNC Symbol;Acc:30545] |
Retrocopy-Parental alignment summary:
>retro_etel_2172
ATGGTGGGTGGCGAGGCGGCCTCGGTGGTGGAGGAACTGGTGTCTGGGGTGCGTCAGGCGGCCGACTTCGCGGAGCAGTT
CCGCGCCTACTCGGAGAGCGAGAAGCAATGGAAGGCCCGGATGGAGTTCATCTTGCGCCACCTGCCAGACTACCGCGATC
CGCCCGACGGCAGCGGCCGCCTGGACCAGCTGCTGTCCCTCTCCATGGTTTGGGCTAACCACCTCTTCTTGGGCTGCAGT
TACAACAAAGACCTTTTAGACAAGGTGATGGAAATGGCTGATGGGATTGAAGTGGAAGATCTGCCACAGTTTACAACCAG
AAGCGAATTAATGAAGAAG
ORF - retro_etel_2172 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 67.83 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | MVGGEAASAVEELVSGVRQVVDFFSEQWSCSEREMQKTWISRMRC---HLSNYCNPP--GGHLDQVRSLS |
| MVGGEAAS.VEELVSGVRQ..DF.......SE.E.Q..W..RM.....HL..Y..PP...G.LDQ..SLS | |
| Retrocopy | MVGGEAASVVEELVSGVRQAADFAEQFRAYSESEKQ--WKARMEFILRHLPDYRDPPDGSGRLDQLLSLS |
| Parental | MVWTNPLS-DYSYNKDLLDKVMEMADGIEVEDLPQFTTRSELMKK |
| MVW.N.L....SYNKDLLDKVMEMADGIEVEDLPQFTTRSELMKK | |
| Retrocopy | MVWANHLFLGCSYNKDLLDKVMEMADGIEVEDLPQFTTRSELMKK |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_2172 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Echinops telfairi | ENSETEG00000006525 | 1 retrocopy |
retro_etel_2172 ,
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