>retro_etel_2178
ACTGACTTGAAGCAAGGCTTGAATGGCGTGCCGATATTCTCTGAAGAGGAATTGACCTTGTTGGATGATTTCTACAAACG
AGTGGACCCTGACCGAGACGTGAGCTTAAGATTGAATGAGCAGTGTGAGCATGTCTCCGTTCACCTGTGGGACCTGCTGG
AGGGGAAGGAAAATCTGTATGTGGAACAAGCTAGAAAGCACTAAAGGAAATTGTTGAGCGGGTTTTTCAGTCAAACTACT
TTGACAGTACCCACAACCACCAAAATGGGTTATGTGAGGAAGAGGAGGCTGCCTCAACACCCACATTGAAGACCAGGGAG
CTGAAGCTGAACCCGAGCCAGCAGAGGCATACACTGAACAGAATGAAGTTGAATCAACAGAGTAGTACGTAAATAGACAA
TGTATGGCAGAAACACCGTTCTGCAGTGGTGAAAAAGAGCAAGTAGATGAGTGGTCAGTTGAACCAGTTGAGGTAGTAAA
TTCACTCCAACAGCAACCACAGGCTGCATGTCCTTCAGTACCAGAGCCCCACACTTTGACTCCAGTGGCTCAGGCAGATC
CCCTCGTGAGAAGACAGCGAGTACAAGACCTTATGGCACAAATGCAGGGGCTGTATAATTTCATTCAGGAATCTATGTTG
GATTTTGAAATCCAGACACTGGATCCTGCCATTGTATCTGCACAGCCCATGAATCCTACACAAAACCTGGACGTGTCCCA
GCTTGTGTGTCCTCCAGTTCATTCTGAATCCAGACTTGCTCAAGCTAATCAAGTTCCCGTACAACCCGAAGCTACCCAGG
TTCCTTCGGTTTCATCCACAAGTGAAGGGTACACATCATCTCAGCCCTCGTATCAGCCTTCTCATGCTGCAGAGCTGCGA
CCACAAAAGGAACTGATTGACCAGTTTCAGGCAACGATCTCTTTAAATACAGACCAGACTACAGCATCATCATCCCTTCC
AGCTGCATCTCAGCTTCAGGTGTTCCAGGCTGGGACAAGCAAACCTTTGCACAGCAGTGGAATCAATGTGAATGCAGCTC
CATTCCAGACCATGCAGACGGTGTTTAATATGAATGCCCCAGTACCTCCTGTTAATGAACCAGAGACTTTGAAGCAGCAA
AGTCAGTACCAAGCCAGTTATAACCACCAGAGCTTTTCCAATCAACCTCACCAAGTAGAACAAACAGAGCTTCAGCAAGA
ACAGCTTCAAACAGTGGTCGGCACTTACCATGGTTCCCAGGACCAGCCCCATCAAGTGACTGGCAACCATCAGCGGCCTC
CCCCAGCAGAAT
ORF - retro_etel_2178 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
89.93 % |
Parental protein coverage: |
67.5 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | TDLKQGLNGVPILSEEELTLLDDFYKLVDPERDMSLRLNEQYEHASVHLWDLLEGKE-KSVCGTTYKALK |
| TDLKQGLNGVPI.SEEELTLLDDFYK.VDP.RD.SLRLNEQ.EH.SVHLWDLLEGKE.KSVCGT..KALK |
Retrocopy | TDLKQGLNGVPIFSEEELTLLDDFYKRVDPDRDVSLRLNEQCEHVSVHLWDLLEGKE<KSVCGTS*KALK |
|
Parental | EIVERVFQSNYFDSTHNHQNGLCEEEEAASAPA-IEEQGAEAEPEPAEEYTEQNEVESTE-YVNRQFMAE |
| EIVERVFQSNYFDSTHNHQNGLCEEEEAAS.P..IE.QGAEAEPEPAE.YTEQNEVESTE.YVNRQ.MAE |
Retrocopy | EIVERVFQSNYFDSTHNHQNGLCEEEEAASTPT<IEDQGAEAEPEPAEAYTEQNEVESTE*YVNRQCMAE |
|
Parental | TQFSSGEKEQVDEWTVETVEVVNSLQQQPQAASPSVPEPHTLTPVAQADPLVRRQRVQDLMAQMQGPYNF |
| T.F.SGEKEQVDEW.VE.VEVVNSLQQQPQAA.PSVPEPHTLTPVAQADPLVRRQRVQDLMAQMQG.YNF |
Retrocopy | TPFCSGEKEQVDEWSVEPVEVVNSLQQQPQAACPSVPEPHTLTPVAQADPLVRRQRVQDLMAQMQGLYNF |
|
Parental | IQDSMLDFENQTLDPAIVSAQPMNPTQNMDMPQLVCPPVHSESRLAQPNQVPVQPEATQVPLVSSTSEGY |
| IQ.SMLDFE.QTLDPAIVSAQPMNPTQN.D..QLVCPPVHSESRLAQ.NQVPVQPEATQVP.VSSTSEGY |
Retrocopy | IQESMLDFEIQTLDPAIVSAQPMNPTQNLDVSQLVCPPVHSESRLAQANQVPVQPEATQVPSVSSTSEGY |
|
Parental | TSSQPLYQSSHATEQRPQKEPIDQIQASSATISLNTDQTTTSSSLPAASQPQVFQAGTSKPLHSSGINVN |
| TSSQP.YQ.SHA.E.RPQKE.IDQ.QA...TISLNTDQTT.SSSLPAASQ.QVFQAGTSKPLHSSGINVN |
Retrocopy | TSSQPSYQPSHAAELRPQKELIDQFQA---TISLNTDQTTASSSLPAASQLQVFQAGTSKPLHSSGINVN |
|
Parental | AAPFQSMQTVFNMNAPVPPVNEPETLKQQSQYQASYN-QSFSNQPHQVEQTELQQEQLQTVVGTYHGSQD |
| AAPFQ.MQTVFNMNAPVPPVNEPETLKQQSQYQASYN.QSFSNQPHQVEQTELQQEQLQTVVGTYHGSQD |
Retrocopy | AAPFQTMQTVFNMNAPVPPVNEPETLKQQSQYQASYNHQSFSNQPHQVEQTELQQEQLQTVVGTYHGSQD |
|
Parental | QPHQVTGNHQQP-PQQN |
| QPHQVTGNHQ.P.PQQN |
Retrocopy | QPHQVTGNHQRP>PQQN |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_2178 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.