RetrogeneDB ID: | retro_etel_2181 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_9306:518..1293(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000012393 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RIOK3 | ||
Ensembl ID: | ENSETEG00000003689 | ||
Aliases: | None | ||
Description: | RIO kinase 3 [Source:HGNC Symbol;Acc:11451] |
Percent Identity: | 82.44 % |
Parental protein coverage: | 53.83 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | KEHSTAEKAVDPKTRLLMYKMVNSGLLETITGCISTGKESVVFHAYGGSMEDEKEDSKVVPTECAITVFK |
K...TAEKAVDPKT.LLMYKMVNSG.LETITGCISTGKES.VFHAYGGS.EDEKED.KVVPTECAI.VFK | |
Retrocopy | K*YFTAEKAVDPKTHLLMYKMVNSGVLETITGCISTGKESLVFHAYGGSIEDEKEDRKVVPTECAIKVFK |
Parental | TSVNEF-NRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLTRMQRAGIPCPTVVMLKKHILVMSFIG |
T..NEF.NRD.YIKDD..FKDRFSKLNP.KII.MWAEKEMHNL.RMQ..GIPCPTVVMLKKH..VMSFIG | |
Retrocopy | TTLNEFKNRDQYIKDD*TFKDRFSKLNPGKIIHMWAEKEMHNLSRMQSTGIPCPTVVMLKKHSSVMSFIG |
Parental | HDQ-VPAPKLKEVKLSSEEMKDAYYQTLDMMQRLYNECTLVHADLSEYNMLWHAGKVWLIDVSQSVEPTH |
H.Q.VPAPKLKEVKLS.EE.KDA..Q.LD..Q.LYNECTLVH.D..EYNML....KVWLIDVSQSVEPTH | |
Retrocopy | HSQ>VPAPKLKEVKLSQEELKDAHCQALDIIQQLYNECTLVHPDIREYNML---EKVWLIDVSQSVEPTH |
Parental | PHGLEFLFRDCRNVSQFFQKGGVMEALSERELFNAVSGLNISADNEADFLAE |
PHGLEFL..DCRNVSQF.QKGGV.EALSE.ELFNAV.GLNISADNE.DFLAE | |
Retrocopy | PHGLEFLCWDCRNVSQFYQKGGVLEALSE*ELFNAVLGLNISADNEGDFLAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000008343 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000020556 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000003689 | 1 retrocopy |
retro_etel_2181 ,
|
Macropus eugenii | ENSMEUG00000006292 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021478 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000004803 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000009062 | 1 retrocopy |