RetrogeneDB ID: | retro_etel_317 | ||
Retrocopy location | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
| Coordinates: | GeneScaffold_5224:3181..3385(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | PDE6H | ||
| Ensembl ID: | ENSETEG00000002798 | ||
| Aliases: | None | ||
| Description: | phosphodiesterase 6H, cGMP-specific, cone, gamma [Source:HGNC Symbol;Acc:8790] |
Retrocopy-Parental alignment summary:
>retro_etel_317
AATAGGGGACCCGTTACCCCCAGGAAAGGGCCCCCCAAATTCAAGCAGCAGCAAACCAGGCTGTTCAAGAGCAGACCCCC
CTCAAGAAAGGCATCCAAGAGTTTGGGGCAACATTCCTGGCATGGAAGATCTGGGAACAGACATGGCCGTCATCTGTCCA
TGGGAGACTTCACCTCCCTGGAGCTGCACCAGATGGCACAATAT
ORF - retro_etel_317 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 63.89 % |
| Parental protein coverage: | 81.93 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 4 |
Retrocopy - Parental Gene Alignment:
| Parental | SQGPATPRQGPPKFKQRQTRQFKSK-PP-KKGVKGFG-DDIPGMEGLGTDITVICLWEA-FSHLELHELA |
| ..GP.TPR.GPPKFKQ.QTR.FKS..PP.KKG...FG...IPGME.LGTD..VIC.WE..F..LELH..A | |
| Retrocopy | NRGPVTPRKGPPKFKQQQTRLFKSR>PP>KKGIQEFG<GNIPGMEDLGTDMAVICPWET<FTSLELHQMA |
| Parental | QF |
| Q. | |
| Retrocopy | QY |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_317 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Echinops telfairi | ENSETEG00000002798 | 1 retrocopy |
retro_etel_317 ,
|