>retro_etel_601
GAGCACTTCGCTGAGCTCGACATCCCCCAGAGCGTCCAGCAGAATGTCTCCATCTACATCCACGTCTACTTCACCAAGAG
CGGCTTCCACCCAGACCCCCAGCAGAAGGCCCTGTACCGCCGGCTTGCCACGGTCCACACATCCCGCATGATCAACAAAT
ACAAGCGCAGGCGGTTCCAGAAAACCAAGAATCTGTTGACGGGAGAGACAGAAGCCGACCCGGAAATGATCAAGAGGGCC
GAGGACTTCGGACCCGTGGAGGTCATCTCCCACTGGCACCCCAACATCACCATCAACATCGTGGACGACCACACGCCGTG
GGTGAAGGGCAGCATGCCCCCACCACTGGACCAGTACGTGAAGTTTGACGCGGTGAGCGGCGATTACTACCCCATCATCT
ACTTCAACGACTACTGGAACCTGCAGAAGGACTACTACCCCATCAACGAGAGCTTGGCCAGCCTGCCGCTGCGCGTCTCC
TTCTGCCCACTCTCGCTGTGGCGCTGGCAGCTCTACGCTGCCCAGAGCACCAAGTCACCCTGGAACTTCCTGGGCGACGA
GCTGTATGAGCAGTCGGATGAGGAGCAGGATTCGGTGAAGGTGGCCCTCCTGGAGACCAACCCTTACCTGCTGGCCCTCA
CCATCATCGTCTCCATTGTCCACAGCGTCTTTGAGTTCCTGGCCTTCAAGAACGACATCCAGTTCTGGAACAGCCGGCAG
TCCCTGGAGGGCCTGTCCGTACGCTCCGTCTTCTTCGGAGTCTTCCAGTCCCTGGTGGTCCTGCTCTACATCCTCGACAG
CGAGACCAACTTCGTGGTGCAGGTCAGTGTCTTCATCGGGGTCCTCATCGACCTCTGGAAGATCACCAAGGTCATGGATG
TCCGGCTGGATCGGGAACACAAACTGGCGGGGATCTTCCCTCGCCTGACCTTCAAGAACAAGTCCACGTACGTCGAGTCC
TCGACCAAAGTATATGATGACATGGCATTCCGTTACCTCTCGTGGATCCTCTTCCCACTCCTGGGCTGCTACGCCGTCTA
CAGCCTGCTGTACCTAGAGCACAAGGGCTGGTACTCCTGGGTGCTCAGCATGCTCTACGGCTTCCTGCTGACCTTCGGCT
TCATCACAATGATGCCCCAGCTCTTCATCAACTACAAGCTCAAGTCCGTGGCCCACCTGCCCTGGCGCATGCTCACCTAC
AAGGCCCTCAACACCTTCATGGACGACTTGTTTGCCTTTGTCATCAAGATGCCCGTGATGTACCGGATCGGCTGCCTGCG
GGACGATGTGGTTTTCTTCATCTACCTCTACCAACGGTGGATCTACCGCGTCGACCCCACACGGGTGAACAAATTTGGCA
TGAGCGGAGAGGAC
ORF - retro_etel_601 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
92.79 % |
Parental protein coverage: |
65.52 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | EHFAELDIPQSVQQNGSIYIHVYFTKSGFHPDPQQKALYRRLATVHTSRMINKYKRRRFQKTKNLLTGET |
| EHFAELDIPQSVQQN.SIYIHVYFTKSGFHPDPQQKALYRRLATVHTSRMINKYKRRRFQKTKNLLTGET |
Retrocopy | EHFAELDIPQSVQQNVSIYIHVYFTKSGFHPDPQQKALYRRLATVHTSRMINKYKRRRFQKTKNLLTGET |
|
Parental | EADPEMIKRAEDFGPVEVISHWHPNITINIVDDHTPWVKGSVPPPLDQYVKFDAVSGDYYPIIYFNDYWN |
| EADPEMIKRAEDFGPVEVISHWHPNITINIVDDHTPWVKGS.PPPLDQYVKFDAVSGDYYPIIYFNDYWN |
Retrocopy | EADPEMIKRAEDFGPVEVISHWHPNITINIVDDHTPWVKGSMPPPLDQYVKFDAVSGDYYPIIYFNDYWN |
|
Parental | LQKDYYPINESLASLPLRVSFCPLSLWRWQLYAAQSTKSPWNFLGDELYEQSDEEQDSVKVALLETNPYL |
| LQKDYYPINESLASLPLRVSFCPLSLWRWQLYAAQSTKSPWNFLGDELYEQSDEEQDSVKVALLETNPYL |
Retrocopy | LQKDYYPINESLASLPLRVSFCPLSLWRWQLYAAQSTKSPWNFLGDELYEQSDEEQDSVKVALLETNPYL |
|
Parental | LALTIIVSIVHSVFEFLAFKNDIQFWNSRQSLEGLSVRSVCFGVLQSLVVLLYILDNETXXXXXXXXXXX |
| LALTIIVSIVHSVFEFLAFKNDIQFWNSRQSLEGLSVRSV.FGV.QSLVVLLYILD.ET........... |
Retrocopy | LALTIIVSIVHSVFEFLAFKNDIQFWNSRQSLEGLSVRSVFFGVFQSLVVLLYILDSETNFVVQVSVFIG |
|
Parental | XXXXXXXXXKVMDVPLNREHKLTEIFPRLTFKDKSTYVESSTKVYDDMAFRYLSWILFPLLGCYAVYSLL |
| .........KVMDV.L.REHKL..IFPRLTFK.KSTYVESSTKVYDDMAFRYLSWILFPLLGCYAVYSLL |
Retrocopy | VLIDLWKITKVMDVRLDREHKLAGIFPRLTFKNKSTYVESSTKVYDDMAFRYLSWILFPLLGCYAVYSLL |
|
Parental | YLEHKGWYSWVLSMLYGFLLTFGFITMTPQLFINYKLKSVAHLPWRMLTYKALNTFIDDLFAFVIKMPVM |
| YLEHKGWYSWVLSMLYGFLLTFGFITM.PQLFINYKLKSVAHLPWRMLTYKALNTF.DDLFAFVIKMPVM |
Retrocopy | YLEHKGWYSWVLSMLYGFLLTFGFITMMPQLFINYKLKSVAHLPWRMLTYKALNTFMDDLFAFVIKMPVM |
|
Parental | YRIGCLRDDVVFFIYLYQRWIYRVDPTRVNEFGMSGED |
| YRIGCLRDDVVFFIYLYQRWIYRVDPTRVN.FGMSGED |
Retrocopy | YRIGCLRDDVVFFIYLYQRWIYRVDPTRVNKFGMSGED |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_601 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.