RetrogeneDB ID: | retro_etel_616 | ||
Retrocopy location | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
| Coordinates: | scaffold_103032:356..1293(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ERLIN2 | ||
| Ensembl ID: | ENSETEG00000016394 | ||
| Aliases: | None | ||
| Description: | ER lipid raft associated 2 [Source:HGNC Symbol;Acc:1356] |
Retrocopy-Parental alignment summary:
>retro_etel_616
ATGACTCAAGCCCGGGTTCTGGTGGCTGCAGTGGTGGGACTGGTGGCTGTCCTCCTGTACACCTCCATCCATAAGATCGA
AGAAGGACACCTGGCTGTGTACTACAGGGGTGGAGCTTTACTAACTAGCCCCAGTGGACCAGGCTATCATATCATGTTGC
CTTTCATAACTACGTTCAGATCTGTGCAGACAACACTACAAACTGATGAAGTTAAAAACGTGCCTTGTGGAACAAGTGGT
GGAGTCATGATCTATATTGACCGAACAGAAGTGGTGAATATGTTGGCTCCTTATGCAGTGTTTGATATCGTGAGGAACTA
CACTTGCAGATTATGACAAGACCTTAATCTTTAATAAAATCCACCACGAGCTGAACCAGTTTTGCAGTGCCCACACACTT
CAAGAAGTTTACATTGAATTGTTTGATCAAATAGATGAAAACCTGGAGCAAGCTCTGCAGAAAGATTTAAACCTCATGGC
TCCGGGTCTCACCATCCAGGCTGTGCGTGTTACAAAACCCAATATCCCAGAAGCCATAGGAAGAAATTTTGAGTTAATGG
AGGCTGAGAAAACAAAACTTCTTATTGCTGTACAGAAACAAAAAGTCGTGGAGAAAGAAGCCGAGACAGAGAGGAAGAAG
GCCATTATAGAAGCCGAGAAGATTGCCCAGGTGGCAAAAATTCAATTTCAGCAGAAGGTGATGGAGAAGGAAACCGAAAA
GCGCATTTCTGAAATTGAAGATGCTGCATTCTTGGCTGGAGAGAAGGCGAAAGCAGATGCTGAGTTTTATGCTACACACA
AATATGCCACCGCCAACAAGCACAAATTGACCCCGGAGTACCTGGATCTCAAAAAGTACCAGGCCATCGCTTCGAACAGT
ACGATCTACTTTGGCAGCAGCATCCCTAGCATGCTTGTGGACACCTCCTGCGCTCTG
ORF - retro_etel_616 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 77.0 % |
| Parental protein coverage: | 92.04 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | MAQLGAVVALAAGFFCSSLFSAVHKIEEGHIGVYYRGGALLTSTSGPGFHLMLPFITSYKSVQTTLQTDE |
| M.Q....VA...G.....L....HKIEEGH..VYYRGGALLTS.SGPG.H.MLPFIT...SVQTTLQTDE | |
| Retrocopy | MTQARVLVAAVVGLVAVLLYTSIHKIEEGHLAVYYRGGALLTSPSGPGYHIMLPFITTFRSVQTTLQTDE |
| Parental | VKNVPCGTSGGVMIYFDRIEVVNFLVPNAVYDIVKNYT-ADYDKALIFNKIHHELNQFCSVHTLQEVYIE |
| VKNVPCGTSGGVMIY.DR.EVVN.L.P.AV.DIV.NYT.ADYDK.LIFNKIHHELNQFCS.HTLQEVYIE | |
| Retrocopy | VKNVPCGTSGGVMIYIDRTEVVNMLAPYAVFDIVRNYT>ADYDKTLIFNKIHHELNQFCSAHTLQEVYIE |
| Parental | LFDQIDENLKLALQQDLTSMAPGLVIQAVRVTKPNIPEAIRRNYELMESEKTKLLIAAQKQKVVEKEAET |
| LFDQIDENL..ALQ.DL..MAPGL.IQAVRVTKPNIPEAI.RN.ELME.EKTKLLIA.QKQKVVEKEAET | |
| Retrocopy | LFDQIDENLEQALQKDLNLMAPGLTIQAVRVTKPNIPEAIGRNFELMEAEKTKLLIAVQKQKVVEKEAET |
| Parental | ERKKALIEAEKVAQVAEITYGQKVMEKETEKKISEIEDAAFLAREKAKADAECYTAMKIAEANKLKLTPE |
| ERKKA.IEAEK.AQVA.I...QKVMEKETEK.ISEIEDAAFLA.EKAKADAE.Y...K.A.ANK.KLTPE | |
| Retrocopy | ERKKAIIEAEKIAQVAKIQFQQKVMEKETEKRISEIEDAAFLAGEKAKADAEFYATHKYATANKHKLTPE |
| Parental | YLQLMKYKAIASNSKIYFGKDIPNMFVDSAGSL |
| YL.L.KY.AIASNS.IYFG..IP.M.VD....L | |
| Retrocopy | YLDLKKYQAIASNSTIYFGSSIPSMLVDTSCAL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_616 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 3 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Echinops telfairi | ENSETEG00000016394 | 3 retrocopies |
retro_etel_1513, retro_etel_616 , retro_etel_722,
|