>retro_etel_664
CCCGGGATCCTGAAAACTTCCCCTTTGTTGTGTCGGGAACAACCTTGACGTCGAAAACAGACAAGTCGGCACGAAGCGAG
CACAGGCCTGGTGCTACAGTAAAAATAATATTCCCTACTTTGAGACGACTGCAAAGGCAGCCAGCAACGTGGAGCATGGC
CTTTGAGACGATTCCAGGAACGCGCTTAAACAGGAAACCCGTGGAGCTGTACAACGAATTCCCTGAGCCCGTCAAACTGG
ACAAGAATGACCGGGCCAAGGGCTCCGCGGAAAGCTGCAGTTGCTGAAGGGGCAGTGAGAATAGAGCGCAGAGCCCTTCA
CAAGCCAAGAACACACGGAGGCCTTCAAACACAAGCCCCCTTGCCTATTCCAAACAAAACCTGAATTGGTCTCTCGTATC
CAGCTGCCAAAAGAACCCCCACCCAACAAGCTCACCCCGGTAGAC
ORF - retro_etel_664 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
74.51 % |
Parental protein coverage: |
68.54 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
4 |
Retrocopy - Parental Gene Alignment:
Parental | PGILKTSPLLCWE-TRLTLKTDKLPQSEHRPGATVKTTSPTLRLVQRKPSTWSRPFRRLPGTH-LNRKQR |
| PGILKTSPLLC.E.T.LT.KTDK...SEHRPGATVK...PTLR..QR.P.TWS..F...PGT..L....R |
Retrocopy | PGILKTSPLLCRE<TTLTSKTDKSARSEHRPGATVKIIFPTLRRLQRQPATWSMAFETIPGTR<LKQETR |
|
Parental | -WSCTTNSLSPSNWTRMTGPRPQRKAAVAEGAVRIE-HVLHKPRTHLGLQ-HKPPCLFQTKPELVSRIQL |
| .WSCTTNSLSPSNWTRMTGPR..RKAAVAEGAVRIE...LHKPRTH.GLQ.HKPPCLFQTKPELVSRIQL |
Retrocopy | <WSCTTNSLSPSNWTRMTGPRAPRKAAVAEGAVRIERRALHKPRTHGGLQ>HKPPCLFQTKPELVSRIQL |
|
Parental | PKE--PTQSTPID |
| PKE..P...TP.D |
Retrocopy | PKEPPPNKLTPVD |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_664 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.