RetrogeneDB ID: | retro_etel_73 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | GeneScaffold_1260:12219..12825(+) | ||
Located in intron of: | ENSETEG00000004401 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000016200 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.14 % |
Parental protein coverage: | 89.33 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VTSHADDEYRWAGVEDPKIMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDL |
VTSH.DDEYRWAG.EDPKIMITTSRDPSS.LKMFAKE..LVFPGAQRMNRGRHEVG.LVRACKANGVTDL | |
Retrocopy | VTSHVDDEYRWAGLEDPKIMITTSRDPSSHLKMFAKEVTLVFPGAQRMNRGRHEVGVLVRACKANGVTDL |
Parental | LVVHEHRGMPVGLIISHLPFGPTAYFT-LCNVVMRHDIPDLGTMSEAKPHLIMHGFSSRLGKRVSDILKY |
.VVHE.RGMPVGLIISHLP.GP......L...VMRHDIPDLGTMSEAKPHL.MHGFSSRL.KRVSDILKY | |
Retrocopy | QVVHERRGMPVGLIISHLPSGPPCILQPLQRLVMRHDIPDLGTMSEAKPHLSMHGFSSRLDKRVSDILKY |
Parental | LFPVPKDDSHRVITFANQDDYISFRHHTYKKVDHHNVELTEVGPRFELKLYMIRLGTLEQEA |
L.PVPKDDSHR.I.FANQDDYISF.HHTYKKVDHHNVELTE.GP..ELKLYMIRLGTL.QEA | |
Retrocopy | LLPVPKDDSHRIIIFANQDDYISFQHHTYKKVDHHNVELTEAGPGVELKLYMIRLGTLAQEA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Echinops telfairi | ENSETEG00000016200 | 2 retrocopies |
retro_etel_1844, retro_etel_73 ,
|
Macropus eugenii | ENSMEUG00000008058 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000008267 | 1 retrocopy |