>retro_etel_858
TGGGGTCCTTTAATACTTGTTCCTAAGACTCCAGGGGTCCTGTCCCACATGCAGCTACAGGAATCAGTTGCTCAGGTGGT
GAAGCCTTCACAGACCCTCACTCTTACCTGCATCATCACTAAGGACTTTGTCTCCAGAACCAGTGCTACTTGGGATTGGA
TCAGGCAGAACCCTGAGGGAGGTTGTGAGTGGAGGAGAAGGATCTTCTATGGGTCAGAGTGGTTTATCGAATACACACCA
TCTCCCAGAGACCATACAGTCATTGAACTAGACACATCCAAGATCCAGCTCTCCCTGAAGCTGAGCTCTGTGACCACTGA
CGACTAGTGTGCAAGGACCAAGGAGAGGAAA
ORF - retro_etel_858 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
64.96 % |
Parental protein coverage: |
79.29 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | WVFLFLVATPGGFLAQVQL-ESGPGLLKPSQTLTLTCIITKGFVSRTSYL-GWIRQNPGRHCEWRRRTFY |
| W..L.LV....G.L...QL.ES.....KPSQTLTLTCIITK.FVSRTS....WIRQNP...CEWRRR.FY |
Retrocopy | WGPLILVPKTPGVLSHMQLQESVAQVVKPSQTLTLTCIITKDFVSRTSATWDWIRQNPEGGCEWRRRIFY |
|
Parental | SGS---KYTPSLIDHIVIDLDTSKIQLSLKLSSVTTDD-TARAKKRK |
| .......YTPS..DH.VI.LDTSKIQLSLKLSSVTTDD..AR.K.RK |
Retrocopy | GSEWFIEYTPSPRDHTVIELDTSKIQLSLKLSSVTTDD*CARTKERK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_858 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.