>retro_etel_941
CCGGGCGCCTTCGCCCAGCTCGGCCAGCTCTCCCGCCTCGACCTCACCTCCAACCACCTGGCCACGTTGGCACCTGACCC
GCTCTTCTCGCATGGTCCGGACGCGGTGGCATGCCCTGCTCCGCTGGTGCTTAGCTTCAGCGGGAACCCGCTGCACTGCA
ACTGCGAGCTACTGTGGCTGGGCAGCTGGCACGGCCTGACCACCTGGAGACATGCGCTTAGCTGACCTGGCTGGCTGCTA
CTTCTGGGCCTTACCTGAGGGCGAGTCCTCCTGCGAGCCGCCCCTCATTGCCTGCCACACGCAGCGCCTCTGGGTGCTGG
AGGGCCAGCGGGCCACGCTGCGGTGCCCGGCCCTGGGCGACCCCACGGCCACCATGCATTGGGTCGGCCCTGATGACCGG
CTGGTCAGCAACTCCTCCCGGGCCCATACCTTCCCCAATGGGACCCTGGAGTTCGGGGTGACTGCTGCTGGGGCCGCGGG
GGACAACACCTGTATTGCTACCAACCCTGCTGGCGAGGCCACGGCGCGAGTGGAGCTGCGGGTGCTGGCCCTGCCCCACG
GCAGGCACAGCAGCACCGAGGGTGACCACCCGGGGCCCTTGGACATCGCCTCCTCGGCTCGCACTGCTGCCAAGGTCGAT
GGGGCGCAAGAGACCGAAGCAGCCGTGCAGGTGACAGAGGTGACCCCCGCCTCGGGGCTGGAGAACTGGGGTCCCGGACG
GCCAGCGGAGCCTGTGTGGATGTTCCAGATCCAGTACAACAGCAGTAAGGACGAAGCGCTCATCTACCGGATCGTCCCTG
CCTCCAGCCACCACTTTCTACTGAAGCACCTGGTTCCCAGTGCGGACTATGACCTCTGCCTGCTGGCCCTGTCGCCGGCC
GCTGGGCCCTCTGACCTCACGGCCACCAGGCTGCTGAGCTGTGCCCACTTCTCCACGCTGCCAGTCACACCTTTGTGCCA
TGCCCTGCAGGCCCACGTGCTGGGCGGGACCCTGACTGTGGCTGTGGGCGGCGTGCTGGTGGCCGCCTTGCTGGTC
ORF - retro_etel_941 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
75.28 % |
Parental protein coverage: |
54.56 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
2 |
Retrocopy - Parental Gene Alignment:
Parental | PGAFSQLGQLSRLDLTSNRLATLAPDPLFSRGRDAEASPAPLVLSFSGNPLHCNCELLWL-RRLARPDDL |
| PGAF.QLGQLSRLDLTSN.LATLAPDPLFS.G.DA.A.PAPLVLSFSGNPLHCNCELLWL...LARPD.L |
Retrocopy | PGAFAQLGQLSRLDLTSNHLATLAPDPLFSHGPDAVACPAPLVLSFSGNPLHCNCELLWL<GQLARPDHL |
|
Parental | ETCASPPGLA---GRYFWAVPEGEFSCEPPLIARHTQRLWVLEGQRATLRCRALGDPTP-TMHWVGPDDR |
| ETCA....LA...G.Y..A.P.......P....R.....W...G.R.....R....P.P.TMHWVGPDDR |
Retrocopy | ETCA*LTWLAATSGPYLRASPPASRPSLP--ATRSASGCWRASGPRC--GARPWATPRP<TMHWVGPDDR |
|
Parental | LVGNSSRARAFPNGTLELGVTGAGDAGDYTCIATNPAGEATARVELRVLALPHGGNGSTEGGRPGPSDIA |
| LV.NSSRA..FPNGTLE.GVT.AG.AGD.TCIATNPAGEATARVELRVLALPHG...STEG..PGP.DIA |
Retrocopy | LVSNSSRAHTFPNGTLEFGVTAAGAAGDNTCIATNPAGEATARVELRVLALPHGRHSSTEGDHPGPLDIA |
|
Parental | ASARTAAEAEGTQETEAAVQVTEVTATSGLVSWGPGRPAEPVWMFQIQYNSSEDEALIYRIVPASPHHFL |
| .SARTAA...G.QETEAAVQVTEVT..SGL..WGPGRPAEPVWMFQIQYNSS.DEALIYRIVPAS.HHFL |
Retrocopy | SSARTAAKVDGAQETEAAVQVTEVTPASGLENWGPGRPAEPVWMFQIQYNSSKDEALIYRIVPASSHHFL |
|
Parental | LKHLVLGADYDLCLLALSPVAGPSDLPATRLLGCAHFSTLPPQLWCHALQAHVLGWTLTVAVGGLLVAAL |
| LKHLV..ADYDLCLLALSP.AGPSDL.ATRLL.CAHFSTLP....CHALQAHVLG.TLTVAVGG.LVAAL |
Retrocopy | LKHLVPSADYDLCLLALSPAAGPSDLTATRLLSCAHFSTLPVTPLCHALQAHVLGGTLTVAVGGVLVAAL |
|
Parental | LV |
| LV |
Retrocopy | LV |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_941 was not experimentally validated.
Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.