RetrogeneDB ID: | retro_etel_947 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_189615:85..491(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000008127 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MDK | ||
Ensembl ID: | ENSETEG00000016707 | ||
Aliases: | None | ||
Description: | midkine (neurite growth-promoting factor 2) [Source:HGNC Symbol;Acc:6972] |
Percent Identity: | 58.27 % |
Parental protein coverage: | 96.48 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MQHRAFLLLALLALTLTSTATKKKDKAKKGGPGGQCAEWAW-GPCTPSS-KDCGVGFREGTCGTQTQRIR |
MQH.AFLLLAL..LT..ST..KKK.K.KKGG.GG...E.A..GP..P...KD.G.....G..GTQTQ.I. | |
Retrocopy | MQHSAFLLLALVVLT--STVAKKKGKVKKGGLGGLGSECAE>GPESPVYIKDTGMSLHKGIWGTQTQCIP |
Parental | CRVPCNWKKEFRADCKYKFENWGACDGGTGTKARQGTLKKARYNAQCQDTILVMKPCTPKTKAKAKAKK |
C.VP.NWKKEF.A..KYKFE.W..CD..T.TKA.Q.TLKKA.Y.AQ....IL.MK..T.KTKAK....K | |
Retrocopy | CGVPFNWKKEFGANFKYKFESWDVCD-CTVTKASQSTLKKAWYKAQY*ESILMMKRSTTKTKAKKGKRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000007740 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000016707 | 2 retrocopies |
retro_etel_1929, retro_etel_947 ,
|
Loxodonta africana | ENSLAFG00000015119 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021448 | 2 retrocopies |