RetrogeneDB ID:

retro_etel_982

Retrocopy
location
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:scaffold_195295:529..1434(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSETEG00000009837
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:DNAJB4
Ensembl ID:ENSETEG00000006777
Aliases:None
Description:DnaJ (Hsp40) homolog, subfamily B, member 4 [Source:HGNC Symbol;Acc:14886]


Retrocopy-Parental alignment summary:






>retro_etel_982
ATGGGCAAGGACTACTACCAGACGCTGGGCTTGGCCCGCGGTGCATCAGACGAGGAGATCAAACGGGCCTACCGCCGCCA
GGCGCTGCGCTACCACCCGGACAAGAGCAAGGAGCCCGGCGCCGAGGAGAAGTTCAAGGAGATCGCCGAGGCCTACGACG
TGTTCAGCGACTCGCGCAAGCGCGAGATCTTTGACCGCTACGGGGAGGAAGGCCTAAAGGGTGGCGGTCCCAGTGGCGGG
AGCAGTGGCGGTGCTAATGGGACCTCATTCAGCTACACGTTCCATGGAGACCCTCATGCTATGTTCGCTGAGTTCTTCTG
TGGCCGAAATCCCTTTGATACTTTTTTTGGGCAGCGGAACTGGGAAGACATGGACATTGACGACCCGTTTTCTGGCTTCC
CCATGGGCATGAGTGGCTTCACCAACATGAACTTTGGCTGCTCCCGTCCCACCCAGGAACCCACCCGAAAGAAACAAGAT
CCCTCTGTCACCCATGACCTCAGAGTCTCACTGGAAGAAATCTACAGTGGCTGTACCAAAAAAATGAAGATCTCTCACAA
GCGGCTGAACCCCGACGGAAAGAGCATCCGCAACGAAGACAAGATCTTGACGATCGAAGTGAAGAGGGGGTGGAAAGAAG
GGACCAAAATCACCTTCCCCAAGGAAGGAGACCAGACTTCCAGCAACATTCCAGCTGACATCGTCTTTGTTTTAAGGACA
AGCCCCACAATATCTTTAAGAGAGATGGCTCTGACGTCGTGTACCCAGCCAGGGTCAGCCTCCGGGAGGCTCTGTGTGGC
TGCACGGTGAATGTCCCCACTCTGGACTGCAGGACCATACCCGTCGTGTTCAAAGATGTCATCAGGCCTGGCATGCGGCG
GAAAGTTCCTGGAGAAGGCCTCCCC

ORF - retro_etel_982 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 63.16 %
Parental protein coverage: 88.72 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalMGKDYYGILGIEKGASEEDIKKAYRKQALRFHPDKNKSPQAEEKFKEVAEAYEVLSDPKKREIYDQFGEE
MGKDYY..LG...GAS.E.IK.AYR.QALR.HPDK.K.P.AEEKFKE.AEAY.V.SD..KREI.D..GEE
RetrocopyMGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKSKEPGAEEKFKEIAEAYDVFSDSRKREIFDRYGEE
ParentalGLKGG--AGGTDG--QGGTFRYTFHGDPHATFAAFFGGSNPFDIFFGRRMAGGRDPEDMEVDGDPFSAFG
GLKGG...GG..G...G..F.YTFHGDPHA.FA.FF.G.NPFD.FFG.R.....D..D....G.P....G
RetrocopyGLKGGGPSGGSSGGANGTSFSYTFHGDPHAMFAEFFCGRNPFDTFFGQRNWEDMDIDD-PFSGFPMGMSG
ParentalFSMNGYPRDRNSVGPSRLKQDPPIIHELRVSLEEIYSGCTKRMKISRKRLNPDGRSYRSEDKILTIEIKK
F........R....P.R.KQDP...H.LRVSLEEIYSGCTK.MKIS.KRLNPDG.S.R.EDKILTIE.K.
RetrocopyFTNMNFGCSRPTQEPTRKKQDPSVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKR
ParentalGWKEGTKITFPREGDETPNSIPADIVFII-KDKDHPKFKRDGSNIIYNAKISLREALCGCSIDVPTMDGR
GWKEGTKITFP.EGD.T...IPADIVF...KDK.H..FKRDGS...Y.A..SLREALCGC...VPT.D.R
RetrocopyGWKEGTKITFPKEGDQTSSNIPADIVFVL<KDKPHNIFKRDGSDVVYPARVSLREALCGCTVNVPTLDCR
ParentalTIPMSLNDIVKPGMRRRIIGYGLP
TIP....D...PGMRR...G.GLP
RetrocopyTIPVVFKDVIRPGMRRKVPGEGLP

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Echinops telfairi was not studied using RNA-Seq expression data.
Echinops telfairi was not studied using ChIP-Seq data.
Echinops telfairi was not studied using EST data.
Echinops telfairi was not studied using FANTOM5 data.
retro_etel_982 was not experimentally validated.

Retrocopy orthology:
Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Echinops telfairi ENSETEG00000006777 1 retrocopy
retro_etel_982 ,



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