RetrogeneDB ID: | retro_fcat_1023 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:36788485..36788846(-) | ||
Located in intron of: | ENSFCAG00000014340 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ORAOV1 | ||
Ensembl ID: | ENSFCAG00000026606 | ||
Aliases: | None | ||
Description: | oral cancer overexpressed 1 [Source:HGNC Symbol;Acc:17589] |
Percent Identity: | 65.85 % |
Parental protein coverage: | 99.17 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | RFHGEGYQEGYEEGSSLGIIEGRRYGTLHGA-KIGSELVSYD-SIPFPFPLKVHECATEKDSKKMKALES |
RF.G.G.Q.GYEEG.S.GI.EGR.YGTLHG..KI.SE...Y..S..F......H..ATEKDSK.MK.LES | |
Retrocopy | RFPGGGFQKGYEEGNSVGINEGRQYGTLHGV>KISSEMECYQ<SVAFAWQCLLHSYATEKDSKRMKVLES |
Parental | LIGMIQKFPYDDPTYDKLHEDLD-RIRGKFKQLCSLLNVQPDFKISAEGSGLS |
L.GMI.KFPYDDPTY.KL..DLD..I.GK.KQLCSLLNV..DF.IS..GSGLS | |
Retrocopy | LTGMIHKFPYDDPTYNKLNKDLD>KIKGKCKQLCSLLNV*WDFTISVKGSGLS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 44 .65 RPM |
SRP017611_kidney | 0 .00 RPM | 27 .83 RPM |
SRP017611_liver | 0 .00 RPM | 13 .44 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001983 | 1 retrocopy | |
Felis catus | ENSFCAG00000026606 | 1 retrocopy |
retro_fcat_1023 ,
|
Homo sapiens | ENSG00000149716 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000003061 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000017307 | 6 retrocopies |