>retro_fcat_109
ATGATCAGCCCAGCCTGGAGCATCTTCCTCATCTGGACTAAAATTGGGCTGTTCCTTCAGGTGGCACCTCTCTTAGTTAT
GGCTAAATCCTGCCCATCTGTATGCCGTTGTGATGCAGGTTTCATTTACTGTAATGATCGCTTTCTGACATCCATTCCAA
CAGGAATACCAGAGGATGCTACAACACTCTACCTTCAGAACAACCAAATAAATAACGCTGGAATTCCTTCAGATTTGAAA
AACTTGCTAAAAGTAGAAAGAATATACCTATACCACAACAGTTTAGATGAATTTCCTACCAACCTACCAAAGTACGTAAA
AGAGTTACATTTGCAAGAAAATAACATAAGGACTATCACTTATGATTCACTTTCAAAAATTCCCTATCTGGAAGAATTAC
ATTTAGATGATAACTCTGTCTCTGCTGTTAGCATTGAAGAAGGGGCATTCCGAGACAGCAACTATCTCCGACTGCTTTTC
CTGTCCCGTAATCACCTCAGCACAATCCCTTGGGGTTTGCCCAGGACTATAGAAGAACTACGCTTGGACGATAATCGCAT
ATCCACTATTTCATCACCATCTCTTCAAGGTCTCACTAGCCTAAAACGCCTGGTTCTGGATGGAAACCTATTGAACAACC
ACGGTTTAGGTGATAAAGTTTTCTTCAACCTAGTCAACTTAACAGAACTGTCATTGGTGCGGAATTCCCTGACTGCTGCA
CCAGTAAACCTTCCAGGCACAAACCTGAGGAAGCTTTATCTTCAAGATAACCACATCAATCGGGTGCCCCCAAATGCTTT
TTCTTATCTAAGGCAGCTGTATCGACTCGACATGTCCAATAACAACCTAAGTAATTTACCTCAGGGTATCTTTGATGATT
TGGACAATATAACCCAACTGATTCTTCGCAACAATCCCTGGTATTGTGGGTGCAAAATGAAATGGGTACGTGACTGGTTA
CAGTCACTACCTATGAAGGTCAATGTGCGTGGGCTTATGTGCCAAGCCCCAGAAAAAGTTCGGGGGATGGCTATCAAGGA
CCTTAATGCAGAACTGTTCGATTGTAAGGACAGTGCAGTGGTAAGCACCATTCAGATAACCACTGCAATACCCAACACAG
TATATCCTGCTCAAGGACAGTGGCCAGCTCCAGTGACCAAACAACCAGACATTAAGAACCCCAAGCTCACTAAAGATCAG
CGAACCACAGGGAGTCCAGCAAGAAAAACAATTATAATTACTGTGAAATCTGTCACCTCTGACACGATTCATATCTCTTG
GAAACTTGTCCTACCTATGACTGCTTTAAGACTCAGCTGGCTCAAACTGGGCCATAGCCCAGCATTTGGATCTATAACAG
AAACAATCGTAACAGGGGAACGCAATGAATACTTAGTCACAGCCCTGGAGCCTGATTCGCCATATCGAGTCTGCATGGTT
CCCATGGAAACCAGTAACCTCTACCTATTTGATGAAGCCCCTGTTTGTATTGAGACTGAAACTGCACCCCTTCGAATGTA
CAACCCTACAACCACCCTTAATCGAGAGCAAGAGAAAGAACCTTACAAAAACCCCAATTTACCGTTGGCTGCCATCATTG
GTGGGGCTGTGGCCCTGGTCACCATTGCCCTTCTTGCTTTAGTGTGCTGGTACGTTCATAGGAACGGATCACTCTTCTCA
AGGAACTGTGCGTACAGCAAAGGGAGGAGAAGAAAGGATGACTATGCGGAAGCTGGCACTAAGAAGGACAACTCCATCCT
GGAAATCAGGGAGACTTCTTTTCAGATGTTACCAATAAGCAATGAACCAATCTCAAAGGAGGAATTTGTAATACACACCA
TATTTCCTCCTAATGGAATGAATCTGTACAAAAACAATCACAGTGAAAGCAGTAGTAACCGAAGCTACAGAGACAGTGGT
ATTCCAGACTCAGATCACTCACACTCATGA
ORF - retro_fcat_109 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
64.57 % |
Parental protein coverage: |
53.76 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | WNRYIYGTGIYIFMEQASLPPMSTTCPSVCRCDHGFVYCNDRGLTSIPADIPDDATTLYLQNNQINNAGI |
| W......T.I..F...A.L..M...CPSVCRCD.GF.YCNDR.LTSIP..IP.DATTLYLQNNQINNAGI |
Retrocopy | WSIFLIWTKIGLFLQVAPLLVMAKSCPSVCRCDAGFIYCNDRFLTSIPTGIPEDATTLYLQNNQINNAGI |
|
Parental | PQDLKTKVNVQVIYLYENDLDEFPVNLPRSLRELHLQDNNVRAIARDSLARIPLLEKLHLDDNSVSTVSI |
| P.DLK....V..IYLY.N.LDEFP.NLP....ELHLQ.NN.R.I..DSL..IP.LE.LHLDDNSVS.VSI |
Retrocopy | PSDLKNLLKVERIYLYHNSLDEFPTNLPKYVKELHLQENNIRTITYDSLSKIPYLEELHLDDNSVSAVSI |
|
Parental | EEDAFADSKRLKLLFLSRNHLSSIPSGLPRTLEELRLDHNRISTIPLHAFKGLNSLRRLVLDDNLLANQR |
| EE.AF.DS..L.LLFLSRNHLS.IP.GLPRT.EELRLD.NRISTI......GL.SL.RLVLD.NLL.N.. |
Retrocopy | EEGAFRDSNYLRLLFLSRNHLSTIPWGLPRTIEELRLDDNRISTISSPSLQGLTSLKRLVLDGNLLNNHG |
|
Parental | IADDTFSRLQNLTELSLVRNSLAAPPLNLPSAHLQKLYLQDNAISHIPYNTLAKMRELERLDLSNNNLTT |
| ..D..F..L.NLTELSLVRNSL.A.P.NLP...L.KLYLQDN.I...P.N.....R.L.RLD.SNNNL.. |
Retrocopy | LGDKVFFNLVNLTELSLVRNSLTAAPVNLPGTNLRKLYLQDNHINRVPPNAFSYLRQLYRLDMSNNNLSN |
|
Parental | LPRGLFDDLESLAQLLLRNNPWFCGCNLMWLRDWVKARAAVVNVRGLMCQGPEKVRGMAIKDITSEMDEC |
| LP.G.FDDL....QL.LRNNPW.CGC...W.RDW.......VNVRGLMCQ.PEKVRGMAIKD...E...C |
Retrocopy | LPQGIFDDLDNITQLILRNNPWYCGCKMKWVRDWLQSLPMKVNVRGLMCQAPEKVRGMAIKDLNAELFDC |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
22 .38 RPM |
5 .97 RPM |
SRP017611_kidney |
1 .55 RPM |
1 .03 RPM |
SRP017611_liver |
0 .71 RPM |
0 .40 RPM |
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_109 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_109 was not experimentally validated.
Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.