RetrogeneDB ID: | retro_fcat_1133 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:148598639..148599157(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000007803 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.84 % |
Parental protein coverage: | 58.92 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | FSVFLGLIFFLELATGILAFVFKDWIRDQLNFFINNNVKAYRDDIDLQNLIDFAQEYWSCCGARGPNDWN |
FS.FL..IFFLEL.TG.LAFVFKDWI.DQL.F..N.N.KAYRD..DLQNLI.FAQEYWSCC.ARGPNDWN | |
Retrocopy | FSAFLVPIFFLELKTGVLAFVFKDWIQDQLDFLVNKNIKAYRDNTDLQNLIYFAQEYWSCCRARGPNDWN |
Parental | LNIYFNCTDLNPSRERCGVPFSCCVRDPAEDVLNTQCGYDVRLKLELEQQGSIHTKGCVGQFEKWLQDNL |
LNIYFNCTDLNPS.ERC.VPFSCC.RD.AE.VLN.QC..DV.L.LELEQQ.S.HTKGC.GQFEK..Q.NL | |
Retrocopy | LNIYFNCTDLNPSQERCEVPFSCCIRDSAEHVLNVQCD*DVLLRLELEQQSSVHTKGCIGQFEKRPQNNL |
Parental | IVVAGVFVGIALLQIFGICLAQNLVSDIK-AVKANW |
IVVAG.FV.IALLQIFG..LAQ.LVSDI..AV.ANW | |
Retrocopy | IVVAGLFVSIALLQIFG--LAQSLVSDIR<AVEANW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 24 .45 RPM |
SRP017611_kidney | 0 .00 RPM | 7 .94 RPM |
SRP017611_liver | 0 .00 RPM | 6 .37 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000007218 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000016638 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000007278 | 1 retrocopy | |
Equus caballus | ENSECAG00000022322 | 1 retrocopy | |
Felis catus | ENSFCAG00000007803 | 1 retrocopy |
retro_fcat_1133 ,
|
Mustela putorius furo | ENSMPUG00000012505 | 1 retrocopy |