>retro_fcat_117
ATGGTGCTGGATCTGGATTTGTTTCGGGTAGATAAAGGAGGGGACCCAGCCCTCATCCGAGAGACGCAGGAGAAGCGCTT
CAAGGACCCGGGACTAGTAGATCAGCTGGTGAAGGCAGACGGCGAGTGGCGACGATGCCGATTTCGGGCAGACAACTTGA
ACAAGCTGAAGAACCTATGTAGCAAGACAATTGGGGAGAAAATGAAGAAAAAAGAGCCAGTGGGGGATGAGTCCATTCCG
GAGGATGTATTAAATCTTGATGACCTCACTGCAGACACTTTAGCTAACCTGAAAGTCTCACAAATCAAAAAAGTCCGGCT
CCTCATCGATGAAGCCATCCTAAAATGTGATGCCGAGCGGGTAAGGTTGGAGGCAGAGCGGTTTGAGAACCTCCGAGAGA
TAGGGAACCTTCTGCATCCCTCTGTGCCCATCAGCAATGACGAGGATGCAGACAACAAAGTCGAGAGGATCTGGGGTGAC
TGTACGGTCAGGAAGAAGTACTCTCACGTGGACCTGGTGGTGATGGTAGATGGCTTTGAAGGCGAAAAGGGGGCCGTGGT
GGCTGGAAGTCGAGGGTACTTCCTGAAGGGGGTCCTGGTATTCCTGGAACAGGCGCTCATCCAGTATGCCCTTCGCACTT
TGGGGAGTCGGGGCTACACTCCCATTTATACTCCCTTTTTCATGAGGAAGGAGGTCATGCAGGAAGTGGCACAGCTCAGC
CAGTTTGACGAAGAACTGTATAAGGTGATTGGCAAAGGCAGTGAAAAGTCGGATGACAACTCCTATGATGAGAAATACCT
GATTGCCACATCAGAGCAGCCTATAGCTGCTCTGCACCGGGACGAGTGGCTGCGGCCCGAGGATCTGCCAATCAAGTATG
CCAGCCTGTCCACCTGCTTTCGCCAGGAGGTGGGCTCCCATGGCCGAGACACCCGCGGCATCTTTCGAGTCCATCAGTTT
GAGAAGATTGAACAGTTTGTCTACTCGTCACCACACGACAACAAGTCATGGGAGATGTTTGAAGAGATGATTGCTACCGC
AGAGGACTTCTACCAGTCTTTGGGGATCCCTTACCACATTGTGAATATTGTCTCAGGTTCTTTGAATCATGCTGCCAGTA
AGAAGCTTGACCTGGAGGCCTGGTTTCCGGGCTCCGGAGCCTTCCGTGAGTTAGTCTCCTGTTCTAACTGCACAGACTAT
CAGGCTCGCCGGCTCCGAATCCGATACGGGCAAACCAAGAAGATGATAGACAAGGTAGAGTTTGTCCACATGCTCAATGC
CACGATGTGCGCCACCACTCGCACCATCTGCGCCATCCTGGAGAACTACCAGACAGAGAAGGGGATTGTTGTGCCTGAGA
AATTGAAGGAGTTCATGCCGCCAGGTCTCCAAGAACTGATCCCTTTTGTGAAGCCTGCCCCCATTGACCAGGAGCCATCA
AAGAAGCAGAAGAAGCAGCATGAGGGCAGCAAAAAGAAAGGGGCAGCAAGAGATGTCCCCCTAGAAAGCCGGCTGCAGAA
CATGGAGGTCACTGATTCTTGA
ORF - retro_fcat_117 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
99.61 % |
Parental protein coverage: |
99.81 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | VLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADGEWRRCRFRADNLNKLKNLCSKTIGEKMKKK |
| VLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADGEWRRCRFRADNLNKLKNLCSKTIGEKMKKK |
Retrocopy | VLDLDLFRVDKGGDPALIRETQEKRFKDPGLVDQLVKADGEWRRCRFRADNLNKLKNLCSKTIGEKMKKK |
|
Parental | EPVGDESIPEDVLNLDDLTADTLANLKVSQIKKVRLLIDEAILKCDAERVRLEAERFENLREIGNLLHPS |
| EPVGDESIPEDVLNLDDLTADTLANLKVSQIKKVRLLIDEAILKCDAERVRLEAERFENLREIGNLLHPS |
Retrocopy | EPVGDESIPEDVLNLDDLTADTLANLKVSQIKKVRLLIDEAILKCDAERVRLEAERFENLREIGNLLHPS |
|
Parental | VPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYAL |
| VPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYAL |
Retrocopy | VPISNDEDADNKVERIWGDCTVRKKYSHVDLVVMVDGFEGEKGAVVAGSRGYFLKGVLVFLEQALIQYAL |
|
Parental | RTLGSRGYTPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRD |
| RTLGSRGYTPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRD |
Retrocopy | RTLGSRGYTPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAALHRD |
|
Parental | EWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMIATAEDFY |
| EWLRPEDLPIKYA.LSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMIATAEDFY |
Retrocopy | EWLRPEDLPIKYASLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMIATAEDFY |
|
Parental | QSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMMDKVEF |
| QSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKM.DKVEF |
Retrocopy | QSLGIPYHIVNIVSGSLNHAASKKLDLEAWFPGSGAFRELVSCSNCTDYQARRLRIRYGQTKKMIDKVEF |
|
Parental | VHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMPPGLQELIPFVKPAPIDQEPSKKQKKQHEGSK |
| VHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMPPGLQELIPFVKPAPIDQEPSKKQKKQHEGSK |
Retrocopy | VHMLNATMCATTRTICAILENYQTEKGIVVPEKLKEFMPPGLQELIPFVKPAPIDQEPSKKQKKQHEGSK |
|
Parental | KKGAARDVPLESRLQNMEVTDS |
| KKGAARDVPLESRLQNMEVTDS |
Retrocopy | KKGAARDVPLESRLQNMEVTDS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
2 .75 RPM |
42 .58 RPM |
SRP017611_kidney |
0 .62 RPM |
15 .56 RPM |
SRP017611_liver |
0 .91 RPM |
22 .95 RPM |
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_117 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_117 was not experimentally validated.
Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.