RetrogeneDB ID: | retro_fcat_1172 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:39302924..39303237(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000009408 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.71 % |
Parental protein coverage: | 88.14 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VPAGLEKRLCAATAAILSKPEDRVNVTLRPGLAMAVNGSTDPCAQLIISSIGVVG-TAEENRGHSARFFE |
VP.GL..RL..A.AAI...PED.V.....PGLA..VN.ST.PC.QL.ISSI...G.TAEEN..H.A.FF. | |
Retrocopy | VPTGLVERLGTASAAIRGQPEDYVSMMV*PGLALVVNSSTEPCVQLLISSIPCGG>TAEENCSHKAQFFK |
Parental | FLTKEMGLGQDRIIIRFFPLEPWQIGKKGTVMTFL |
.LTKE..LGQD.III.F.PLEPWQIGKKGTVMTFL | |
Retrocopy | SLTKELDLGQDPIIICFPPLEPWQIGKKGTVMTFL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 3 .56 RPM |
SRP017611_kidney | 0 .00 RPM | 31 .95 RPM |
SRP017611_liver | 0 .00 RPM | 30 .12 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000013811 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000009483 | 1 retrocopy | |
Felis catus | ENSFCAG00000009408 | 1 retrocopy |
retro_fcat_1172 ,
|
Macaca mulatta | ENSMMUG00000004552 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000002935 | 1 retrocopy |