>retro_fcat_1263
CCCCAGTCCCAGTTGCAGGAGATCTCATTTGCCTCAACCCTGAAAGAGGTTCTTGACAACCTAGACAGTCACCTGAAGAA
ATCTGAATACTTTTGCTTTCCTCTGGTTCCCACACCGTGAGAAGATCAGTGTCATCCACCAGGACCACACCAACAAGCCT
CCCTCCTCTTCAGCCAACTGGTTTTGGAACTATGTTATCAGATTCTCTTTACTAGAGTTCTTGCTCTGGATCAGTGCCTT
CCTGCAGGGTCCTGTGGGATGGATAAATCACCCCCTTTTGGCTCCTGTTCACGTGGAAGAAGGAGGGAAGCAACCTCGGC
CATAAGATCTTCACCTATGAGTGCCTCTCAAAGCAGCATGTCCAGGATAGGGTCATCCCCAGACAGAAGACCAAAGAGGC
CTTGCTAGAACTGAAGGTCATTGTGGGAGCCCACCCCAAGATGGTGGCCTACTGCCCTGTGGAGGTGTGCTTCATCCAGG
GGATGACATCCTGTTGAGTTCTTCCTTCCAGAGGCACAGCTGCTACATGAATATCATTATGTACGAGTTATATGCAAGGA
TGTGCCATGGCTGGACTACTGACTGGCTTAGGAGACCATCATGAAGACAGTCCAGGTCCGGCTCCCCCTTGGTCAAGGCC
CACAGCTGTATGTTGAAGGACTTTTGAGAAAATCTATCTAGCCTTTTCGAAGTTCTGTGTCATTTGAGAAAAGCTAAACC
CCACTAGGATATTTCTAAATGCATATCTGAAGAAAGTATTGTAC
ORF - retro_fcat_1263 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
69.73 % |
Parental protein coverage: |
57.95 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
6 |
Retrocopy - Parental Gene Alignment:
Parental | PQFHLQEISFPSTLDEVLDNLDSHLKKSEYF-RFLWFPHSENVSVIYQDHTNKPPSSSANWFWDYAIGFY |
| PQ..LQEISF.STL.EVLDNLDSHLKKSEYF..FLWFPH.E..SVI.QDHTNKPPSSSANWFW.Y.I.F. |
Retrocopy | PQSQLQEISFASTLKEVLDNLDSHLKKSEYF>AFLWFPHREKISVIHQDHTNKPPSSSANWFWNYVIRFS |
|
Parental | LLEFLLWISSFLPGLVGWINR-FFFWLLFTRKRESSNLSHEIFTYECRFKQHVQDWAIPREKTKEALLEL |
| LLEFLLWIS.FL.G.VGWIN...F..L....K.E.SNL.H.IFTYEC..KQHVQD..IPR.KTKEALLEL |
Retrocopy | LLEFLLWISAFLQGPVGWINH>PFWLLFTWKK-EGSNLGHKIFTYECLSKQHVQDRVIPRQKTKEALLEL |
|
Parental | KAVLETHPKMVAHFPVEVRFTR-GDDILLSPCFQRDSCYMNIIMYRPYG-KDIPRLDYWLAYETIMKKVG |
| K.....HPKMVA..PVEV.F...GDDILLS..FQR.SCYMNIIMY..Y..KD.P.LDY.LA.ETIMK.V. |
Retrocopy | KVIVGAHPKMVAYCPVEVCFIQ<GDDILLSSSFQRHSCYMNIIMYELYA<KDVPWLDY*LA*ETIMKTVQ |
|
Parental | GR-PHWAKMHACMCRD-FEKMYPAFSKFCAIREKLDPTGMFLNAYLEKVFY |
| .R.....K.H.CM..D.FEK.Y.AFSKFC.I.EKL.PT..FLNAYL.KV.Y |
Retrocopy | VR>SPLVKAHSCMLKD>FEKIYLAFSKFCVI*EKLNPTRIFLNAYLKKVLY |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
0 .23 RPM |
SRP017611_kidney |
0 .00 RPM |
0 .31 RPM |
SRP017611_liver |
0 .00 RPM |
67 .02 RPM |
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_1263 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_1263 was not experimentally validated.
Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.