>retro_fcat_1267
ATGGCGGAGGCTGAAGAGGGTACTTTGTGGCCCACAGGAGCCTCTGCTGCCTCAATTAAATTCAGCTTTAGTCGCACAAT
GGAGCAGAGACTGCTGGCGGATACAGATGACTCAGGTGTGGCTCTGGAGGAGAAGGATTTCTTAAAGACCCTGGAAGGGA
GCAAGCTTCTGAGAATGAAACCCTCAGAACCCCCCAAGGAACTCGTCATCCTTTTGATCCAGAATGGCCATTGCAGGCAG
CTACCGACCCAGTCTCTGGGTCATCCACAAATACTGAGGCCTTGGTGGATATGGTGCTGTCCCAGGCTGTGAAGGAGCTC
ACTGAGAACTCCAAGAAGTCCCTGGAGGAGAGAGAAAAATCAGCAAGCCCCATGTCAACCCCATGCTTGCTAACCCCATG
ATCCAGCAAGAATGCATCCCCAACCAGGAGGTGGCAGATAGCAAACCCTGGGCTGAGACAGTGCTGGAGGAAGCTGACTA
GGAGGCAGTCCCTATAGAAGCCTATGGGCTGGCTGTGTTATGAGGTATGGGCTGGAAACCTGGCGAGGGCGTTGGCCGCA
CCTTCAATCAAGTGTTGAAGCCCCGTGTTAACCCACCAAGGCCAAAGGGGTTAGGCCTGGGTGCGAACCTGACTGAAGTC
GGGGTCCTGGCCCCCCACCGGCCTCCACCCGAAGCCCAGATGAGGAGCAAGAGAAGGATAAGGAAGACCAGCCTCAAGGA
CTGGTGCCCCAGGGAGCTGTGGTAGTTCTTTCTGGCCCTCACCAAGGCCTCTATGGAAAGTAGAAGGCCTCGATCCTGAC
AGCGTTCGGGCCATGGTTCACCTGGCCATGGGGAGCTGAATGGTAACTGTTAGTGAATACTGGCTGCGCCTGTCTCCCAG
CAGGAGTTTGACAAGAACTCCTTGGATCTCAGCCAGTTGCATAAAACCTCC
ORF - retro_fcat_1267 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
74.06 % |
Parental protein coverage: |
65.34 % |
Number of stop codons detected: |
3 |
Number of frameshifts detected |
6 |
Retrocopy - Parental Gene Alignment:
Parental | MADAEDGTLRPAGASAAPISFSFSRTSARRRLADPGDDASAAPEEKDFLKTVEGRELQSVKPSETPKELV |
| MA.AE.GTL.P.GASAA.I.FSFSRT...R.LAD..DD...A.EEKDFLKT.EG..L...KPSE.PKELV |
Retrocopy | MAEAEEGTLWPTGASAASIKFSFSRTMEQRLLADT-DDSGVALEEKDFLKTLEGSKLLRMKPSEPPKELV |
|
Parental | IPLIQNGHRRQPPTQA-PGPSTNTEALVEGVLSQAVKEIIEDSKKSLEERENSG---IDPMLAIP-MIQK |
| I.LIQNGH.RQ.PTQ...G.STNTEALV..VLSQAVKE..E.SKKSLEERE.S......P.L..P.MIQ. |
Retrocopy | ILLIQNGHCRQLPTQS<SGSSTNTEALVDMVLSQAVKELTENSKKSLEEREKSASPMSTPCLLTP<MIQQ |
|
Parental | GCIPNGEGADSEPRAETVPEEADYEAVPVEAYGLAMLRGMGWKPGEGIGRTFNQVVKPRVNSLRPKGLGL |
| .CIPN.E.ADS.P.AETV.EEAD.EAVP.EAYGLA.L.GMGWKPGEG.GRTFNQV.KPRVN..RPKGLGL |
Retrocopy | ECIPNQEVADSKPWAETVLEEAD*EAVPIEAYGLAVL*GMGWKPGEGVGRTFNQVLKPRVNPPRPKGLGL |
|
Parental | GANLTEVQALA-PTGPHRLPKP-DEEQEKDKEDQPQGLVPGGAVVVLSGPHRGLYG-KVEGLDPDNVRAM |
| GANLTEV..LA.PTG.H..PKP.DEEQEKDKEDQPQGLVP.GAVVVLSGPH.GLYG.KVEGLDPD.VRAM |
Retrocopy | GANLTEVGVLA>PTGLH--PKP>DEEQEKDKEDQPQGLVPQGAVVVLSGPHQGLYG<KVEGLDPDSVRAM |
|
Parental | VRLAVGSRMVTVSEYYLQ-PVSQQEFDKNSLDLMQQNGTA |
| V.LA.GS.MVTVSEY.L..PVSQQEFDKNSLDL.Q...T. |
Retrocopy | VHLAMGS*MVTVSEYWLR<PVSQQEFDKNSLDLSQLHKTS |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
11 .25 RPM |
SRP017611_kidney |
0 .00 RPM |
13 .50 RPM |
SRP017611_liver |
0 .00 RPM |
6 .77 RPM |
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_1267 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_1267 was not experimentally validated.
Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
4 retrocopies.