RetrogeneDB ID: retro_fcat_1299

Retrocopy location

• Organism: Cat (Felis catus)
• Coordinates: C2:117540899..117541237(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSFCAG00000031970
• Aliases: None
• Description: None

Sequence

>retro_fcat_1299
ATGGCTCAAGATTCAATAGGTCTTTCTTCTGATTATCAGTTTTGAATATGAAAGTTTTCTGTTGAGACTAAGCCTCCACT
CTGGAAAGCCAGCAATACACCTGCCTTTGCTTGTGTCAGTTCCAGCAGCTCTCAAGACAGATGCCGGAAGCTAGAAAGAG
GTGAATTCTAATAAAATCGTTGAAAGAGTCCCCTCAATTGCTCTACTGCTGGCAAGACCCTGCTGGAATCTTTTTATCCT
AGTGTATGATAAAAGCCAAAAAAATTCTAATATGATGTTTATGTTGTTGGATTAAGAAAGTGCCACAGAATTCTGGAGAA
TTGAAACTTAACTCCTGG

Alignment

ORF - retro_fcat_1299 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.07 %
• Parental protein coverage: 93.39 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MAQDSVGFSSDYQFWMQKLSLW-DQASTLETQKDTCLHLPRFQEFLRQMYEVLK-EMDSNMIIERFPTIG
          MAQDS.G.SSDYQF...K.S...D.ASTLE.Q..TCL.L..FQ...RQM.E..K.E..SN.I.ER.P.I.
Retrocopy MAQDSIGLSSDYQF*I*KFSVE<D*ASTLESQQYTCLCLCQFQQLSRQMPEARK<EVNSNKIVERVPSIA

Parental  QLLAKTCWNPFILAFDESQK-ILLWCLCCLINKEPQNSEELKLNSW
          .LLA..CWN.FIL..D.SQK.IL..CLCC.I.K.PQNS.ELKLNSW
Retrocopy LLLARPCWNLFILVYDKSQK>ILI*CLCCWIKKVPQNSGELKLNSW

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	0.00 RPM	0.00 RPM
SRP017611_kidney	0.00 RPM	0.31 RPM
SRP017611_liver	0.00 RPM	0.10 RPM

ChIP-Seq

Felis catus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_fcat_1299 retrocopy.

TSS

Felis catus was not studied using FANTOM5 data.

Lab

retro_fcat_1299 was not experimentally validated.

Homology

Retrocopy orthology:

Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000031970	1 retrocopy	retro_fcat_1299 ,