RetrogeneDB ID: | retro_fcat_1321 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:13342010..13342368(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UCHL1 | ||
Ensembl ID: | ENSFCAG00000025457 | ||
Aliases: | None | ||
Description: | ubiquitin carboxyl-terminal esterase L1 (ubiquitin thiolesterase) [Source:HGNC Symbol;Acc:12513] |
Percent Identity: | 63.64 % |
Parental protein coverage: | 50.88 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KMQLKPMEINPEV--SVRSRLGVAGQWRFADVLGLEEEALGSVPAPACA---LLLLFPLTAQHENFRKK- |
KMQLK..EIN.E....V...LGVAGQ.RF.DVLGLE..ALG..P.P..A...LLLLFPLTAQ.E..RKK. | |
Retrocopy | KMQLKLLEINLEMLNKVLAWLGVAGQGRFEDVLGLEA-ALGLGPVPD*ALLLLLLLFPLTAQQETLRKK> |
Parental | QIEELKGQEVSPKVYFMKQTIGNSCGTIGLIHAVANNQDKLEFEDGSVLKQ |
Q....KG.EVSPK..FMK.TIGN..GT.GL..AVA.NQDKLE.ED...LKQ | |
Retrocopy | QTGDQKGREVSPKEHFMKRTIGNLRGTTGLTQAVASNQDKLECEDRFFLKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 301 .97 RPM |
SRP017611_kidney | 0 .00 RPM | 10 .82 RPM |
SRP017611_liver | 0 .10 RPM | 0 .10 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003295 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000019346 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000012347 | 1 retrocopy | |
Felis catus | ENSFCAG00000025457 | 1 retrocopy |
retro_fcat_1321 ,
|
Macropus eugenii | ENSMEUG00000013774 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000001353 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000015507 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000011438 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000012095 | 1 retrocopy |