>retro_fcat_1355
TCAGCCAAGATTGTGCAGCTGTTAAAGGAGTGGACAGAGGCCTTCTCCTGTGACTTCCAGGATGAGAAGGCCATGGTTGA
ACCAAAGACCATTACCCACCAGGTCACACAGTGTGACAAGGAGAATGGCACAGTGAACAAGGCTATTTCCCAAATGACAC
AGAGCCTGCTGCTGTAGCTGGCTGCCCAGAGCCAGCTTCAGGAGCTGTGGGAAAAGCTTCACTCACCAGCCATGGACAAA
GGGTCTTTCTTCAAGGCTAAGCCGCCAGCCACTCAGAAGGACATCCTGGGTGTGTGCTTTGACCCCCTGGTGCTGGCCCA
GCAGCTGACTCATACTGAGCTGGAGAGGATCAATAGCATTCACCCTGAGGATCTGATGCAGATCGTCAGCCACATGAACT
CTCGGGACAAGCACTGGTGCCAAGGGGACCTGACCAAGACCTATAGCCTGGAGGCCTGTGACAATGGTTCAACTGCCTTA
GCATGCTAGTGGCCACTGAGGTGTGCCAGGTGGTGAAGAAGAAGCACTGGACCCACATGCTAGAGTTCTTTCTTGCTGTG
GCCCAGAAGCACTTTAATATTGGGAATTTCAACTCCATGATGGCCATCATCTCTGGCATGAACCTCATTCCTGTGGCAAG
GCTTAAGAAAACATGGTCCAAAGTCAAGATGGCCAAGTTTGACATCTTGGAGCACCACATGGACCCATCCAGCAACTTCT
GCAACTACCGCACGGCCCTGCAGGGGGCCACACAAAGGCCCCAGATGGCCAACAACAGCAGAAAGAAGATTGTTATCCCT
GTATTCAACCTTTTCATTAAGGACATTTACTTCCTGCACAAAATCCATACCAATCACTTGCCCAATGGGCATGTTAACTT
CAAGGAATTTAGGGAAATCTCCAGACAAATCCATGAGTTCATGACATGGACTCAGGTAGATTGTCCCTTCGAGAAGGACA
AGAAGATTCAGAACTACCTGCTCACGGCACCCATCTGGAGCGAGGAAGCCCTCTTCATCATCTCCTTTGAAAATGAAGGT
CCTGAAAACCACATCGAGAAGGATAGCTGGAAGACTCTTAGGATGACTCTCCTTAACAGAGCC
ORF - retro_fcat_1355 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
86.45 % |
Parental protein coverage: |
76.67 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | TAKIVQLLKEWTEAFPYDFQDEKAMAELKAITHRVTQCDEENGTVKKAIAQMTQSLLLSLAARSQLQELR |
| .AKIVQLLKEWTEAF..DFQDEKAM.E.K.ITH.VTQCD.ENGTV.KAI.QMTQSLLL.LAA.SQLQEL. |
Retrocopy | SAKIVQLLKEWTEAFSCDFQDEKAMVEPKTITHQVTQCDKENGTVNKAISQMTQSLLL*LAAQSQLQELW |
|
Parental | DKLRSPAMDKGSVLKTKPPATQKDILGVCCDPLVLAQQLTHIELERVSSIHPEDLMQIVSHMDSRDKHRC |
| .KL.SPAMDKGS..K.KPPATQKDILGVC.DPLVLAQQLTH.ELER..SIHPEDLMQIVSHM.SRDKH.C |
Retrocopy | EKLHSPAMDKGSFFKAKPPATQKDILGVCFDPLVLAQQLTHTELERINSIHPEDLMQIVSHMNSRDKHWC |
|
Parental | RGDLTKTYSLEAYDN-WFNCLSMLVATEVCRVVKKKHRTRMLEFFIDVARECFNIGNFNSMMAIISGMNL |
| .GDLTKTYSLEA.DN.WFNCLSMLVATEVC.VVKKKH.T.MLEFF..VA...FNIGNFNSMMAIISGMNL |
Retrocopy | QGDLTKTYSLEACDN<WFNCLSMLVATEVCQVVKKKHWTHMLEFFLAVAQKHFNIGNFNSMMAIISGMNL |
|
Parental | SPVARLKKTWSKVKTAKFDVLEHHMDPSSNFCNYRTALQGATQRSQMANSSREKIVIPVFNLFVKDIYFL |
| .PVARLKKTWSKVK.AKFD.LEHHMDPSSNFCNYRTALQGATQR.QMAN.SR.KIVIPVFNLF.KDIYFL |
Retrocopy | IPVARLKKTWSKVKMAKFDILEHHMDPSSNFCNYRTALQGATQRPQMANNSRKKIVIPVFNLFIKDIYFL |
|
Parental | HKIHTNHLPNGHVNFKKFWEISRQIHEFMTWTQVECPFEKDKKIQNYLLTAPIYSEEALFIASFESEGPE |
| HKIHTNHLPNGHVNFK.F.EISRQIHEFMTWTQV.CPFEKDKKIQNYLLTAPI.SEEALFI.SFE.EGPE |
Retrocopy | HKIHTNHLPNGHVNFKEFREISRQIHEFMTWTQVDCPFEKDKKIQNYLLTAPIWSEEALFIISFENEGPE |
|
Parental | NHMEKDSWKTLRTTLLNRA |
| NH.EKDSWKTLR.TLLNRA |
Retrocopy | NHIEKDSWKTLRMTLLNRA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
47 .40 RPM |
SRP017611_kidney |
0 .00 RPM |
1 .55 RPM |
SRP017611_liver |
0 .00 RPM |
0 .30 RPM |
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_1355 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_1355 was not experimentally validated.
Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.