>retro_fcat_1386
TTGAGCTGGCAGACGTCACCAGATAGCCTTAGAGACTATTTTAGCAAATTTGGAGACATTAGAGAATGTATGGTCATGAG
AGATCCCACTACGAAATGCTCTAGAGTCTACAGTTTCGTCACATTCGCAGACCCAGCAAGTGTAGACGAAGTATTAAGTC
AGCCCCACCATGAGTTCGATTCCAAGATGATCGACCCCAAAGTTGCATTTCCTCGTGGGGCACAACCCAAGATGGTCACA
AGATCAAAGAAGATATTCGTAGGCGGATTATCTGCAAACATGGTGGTGGAGGACGTAAAACAGTACTTTGAACAGTTTGG
CAAGATGGAGGATGCAATGCTGATATTTGATAAAATTACCAAAAGGCTCAGAGGTTTGGCTTTGTTACGTGTGAGAATGA
AGATGTGGAAAAAGTCTGTGGGATTCATTTCCATGAAATCAATAATAAAATGGTGGAATATAAGAAAGCTCAGCCTAGGG
AAGTTATGTTCCCACTGGGGACAAGAGGCCAGGCCTGGGGACTGCCTTACACCATAGATGCATTCATGCTTGGCATGGGA
ATGCTAGGCTACCCCAACTTTGTGACAATCTATGGCCGTGGCTACCCTGTATTTGCTCCTAGCTATGACTATCAGTTCCC
AGACTAT
ORF - retro_fcat_1386 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
83.03 % |
Parental protein coverage: |
71.85 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | LSLSLSTDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAF |
| LS...S.DSLRDYFSKFG.IRECMVMRDPTTK.SR...FVTFADPASVD.VL.QPHHE.DSK.IDPKVAF |
Retrocopy | LSWQTSPDSLRDYFSKFGDIRECMVMRDPTTKCSRVYSFVTFADPASVDEVLSQPHHEFDSKMIDPKVAF |
|
Parental | PRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRG-FGFVTFENEDVVEK |
| PR.AQPKMVTR.KKIFVGGLSAN.VVEDVKQYFEQFGK.EDAML.FDK.T.R.RG.FGFVT.ENED.VEK |
Retrocopy | PRGAQPKMVTRSKKIFVGGLSANMVVEDVKQYFEQFGKMEDAMLIFDKITKRLRG<FGFVTCENED-VEK |
|
Parental | VCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGYPGFAPS |
| VC.IHFHEINNKMVE.KKAQP.EVMFP.GTRG.A.GLPYT.DAFMLGMGMLGYPNFV..YGRGYP.FAPS |
Retrocopy | VCGIHFHEINNKMVEYKKAQPREVMFPLGTRGQAWGLPYTIDAFMLGMGMLGYPNFVTIYGRGYPVFAPS |
|
Parental | YGYQFPGF |
| Y.YQFP.. |
Retrocopy | YDYQFPDY |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .34 RPM |
23 .64 RPM |
SRP017611_kidney |
0 .10 RPM |
14 .02 RPM |
SRP017611_liver |
0 .00 RPM |
7 .68 RPM |
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_1386 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_1386 was not experimentally validated.
Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
2 parental genes, and
2 retrocopies.