>retro_fcat_1409
ATGACTTGGGATGATGGTTTAGCGCAGGATGCTAAAGCATGGGCAAACAAGTGCAAGTTCAAACACAACTCCTGTTTATC
AAAATCCTATGGATGTCATCCGACTTTTCAATATGTTGGAGAAAATATCTGGCTAGGTGGATTCAGCATATTTTCACCAA
GATTGGCTGTTATTGCTTGGTTTAATGAAACTGCATTTTATGATTATAATGCCCTATCATGTTCCAAAGTTTGTGGCCAT
TACACACAGGTAGTTTGGGCCAATTCATATAAAGTCGGTTGTGCAATTACAGTGTGTCCTACACTTGGGAACCATGAAAC
TGCCATATATGTATGCAACTATGGACCTGCAGGAAATTTTCCAAATAGGCCCCCTTACACTAAAGGAGTATCCTGCTCTT
TGTGTGCAAAAGAAGAAACCTGCGAAAACAAGCTCTGCCGTAATAAAGAACTTGATAAGCCTGAAAAATATCCAAATTGG
AGTCCACAAGGGAAGGCACCTCAGCAGATATCATGTAATTCATTGTGCCTAGTTTCTGTTCTTCTGAGACTATTT
ORF - retro_fcat_1409 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
98.92 % |
Parental protein coverage: |
76.13 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MTWDDGLAQVAKAWANKCKFKHNSCLSKSYGCHPTFQYVGENIWLGGFSIFSPRLAVIAWFNETAFYDYN |
| MTWDDGLAQ.AKAWANKCKFKHNSCLSKSYGCHPTFQYVGENIWLGGFSIFSPRLAVIAWFNETAFYDYN |
Retrocopy | MTWDDGLAQDAKAWANKCKFKHNSCLSKSYGCHPTFQYVGENIWLGGFSIFSPRLAVIAWFNETAFYDYN |
|
Parental | ALSCSKVCGHYTQVVWANSYKVGCAITMCPTLGNHETAIYVCNYGPAGNFPNRPPYTKGVSCSLCAKEET |
| ALSCSKVCGHYTQVVWANSYKVGCAIT.CPTLGNHETAIYVCNYGPAGNFPNRPPYTKGVSCSLCAKEET |
Retrocopy | ALSCSKVCGHYTQVVWANSYKVGCAITVCPTLGNHETAIYVCNYGPAGNFPNRPPYTKGVSCSLCAKEET |
|
Parental | CENKLCRNKELDKPEKYPNWSPQGKAPQQISCNSLCLVSVLLRLF |
| CENKLCRNKELDKPEKYPNWSPQGKAPQQISCNSLCLVSVLLRLF |
Retrocopy | CENKLCRNKELDKPEKYPNWSPQGKAPQQISCNSLCLVSVLLRLF |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
0 .00 RPM |
SRP017611_kidney |
0 .10 RPM |
0 .41 RPM |
SRP017611_liver |
0 .00 RPM |
0 .00 RPM |
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_1409 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_1409 was not experimentally validated.
Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
1 parental gene, and
1 retrocopy.