>retro_fcat_1618
TGGGGTATACAGGAGAACCAGGAAGAAGAGGCCATAGGGAAGGGCAGCATGGGCTGCAGCAGTGGCAATGGGGAGAATAG
TGTGGGGCTCACAGTGCGGGAGGAGGGACTACCCATCATGCCCAAGCACCTGGCCCTGGACTATACTGTATCCTGCAGCA
TCTGTATCAAGGAGAACTTCCTGGGGGCAGCACTGGATGGCCATGTGGTGGCTGCGGCAGAGGCCCTAAAGTAGAGTGGG
CACCAGCATGATGGGCAGCTAGTGAGCCAATGGGCTATTTCACCATGCAGCTTCTGTAGGGACCAGACTGCCTGGATAGA
AGGCCATGAGCCTAGCTGTCAAAGCACTGGGGTCCTCATGGCCCACATGGATGCTATAATCTGTCCCTATGTTGGGTGCT
AGGTGGCTATGTCATCCACAGGCACAATCAAGGCCATGGTGGTATGTTATTCAGTCAATAGGCTGTGGAACATGAAGCAT
GCTGACAATCCACATGGCAGTGGGCACTGCATCACCTGTTATCTATTACCTGAATCAGAACTGGGACATAAAGGTGCATG
GCAGGCTACTGCAATTCTTCCCTGAGAGCTGGACTGTGGTAACCAATATC
ORF - retro_fcat_1618 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
62.38 % |
Parental protein coverage: |
50.62 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | WARQENREAEAEGEGGMGCSSDSGEASAGL--REEVLPATPERLALDYIVPCMRYYGICVKDSFLGAALG |
| W..QEN.E.EA.G.G.MGCSS..GE.S.GL..REE.LP..P..LALDY.V.C.....IC.K..FLGAAL. |
Retrocopy | WGIQENQEEEAIGKGSMGCSSGNGENSVGLTVREEGLPIMPKHLALDYTVSC----SICIKENFLGAALD |
|
Parental | GCVLAEVEALKRSGRLRDGQLVSQRAIPPRSIRGDQIAWVEGHEPGCRSIGVLMAHVDAVIRHCAG-RLG |
| G.V.A..EALK.SG...DGQLVSQ.AI.P.S...DQ.AW.EGHEP.C.S.GVLMAH.DA.I....G..LG |
Retrocopy | GHVVAAAEALK*SGHQHDGQLVSQWAISPCSFCRDQTAWIEGHEPSCQSTGVLMAHMDAIICPYVG<VLG |
|
Parental | GYVIN-GRTKAMVACYPGNGLGYVRHVDNPHGDGRCITC-IYYLNQNWDVKVHGGLLQIFPEGRPVVANI |
| GYVI..G..KAMV.CY..N.L....H.DNPHG.G.CITC.IYYLNQNWD.KVHG.LLQ.FPE...VV.NI |
Retrocopy | GYVIH>GTIKAMVVCYSVNRLWNMKHADNPHGSGHCITC>IYYLNQNWDIKVHGRLLQFFPESWTVVTNI |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
41 .43 RPM |
SRP017611_kidney |
0 .00 RPM |
25 .87 RPM |
SRP017611_liver |
0 .00 RPM |
20 .12 RPM |
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_1618 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_1618 was not experimentally validated.
Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.