RetrogeneDB ID: | retro_fcat_1680 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E2:2190496..2191117(+) | ||
Located in intron of: | ENSFCAG00000022240 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLC25A36 | ||
Ensembl ID: | ENSFCAG00000027489 | ||
Aliases: | None | ||
Description: | solute carrier family 25 (pyrimidine nucleotide carrier ), member 36 [Source:HGNC Symbol;Acc:25554] |
Percent Identity: | 57.94 % |
Parental protein coverage: | 68.17 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | GAILTCPLEVVKTRLQSSSVTLYISEVQLNTMAGASV-NRVVSPGPLHCLKVILE-KEGPRSLFRGLGPN |
GA..TCPL.V..T.L.SS.V.L..SEVQLNT....SV....VS.GPL.CL.V.LE.K....SLFRG.GPN | |
Retrocopy | GAGRTCPLKVIVTQLWSSAVMLSTSEVQLNTRLRPSV>TKPVSSGPLQCLNVTLE<KRKVCSLFRGSGPN |
Parental | LVGVAPSRAIYFAAYSNCKEKLNDIFDPDSTQVHMISAAMAGFTAITATNPIWLVKTRLQLDARNRGEKR |
...VA.SRA..FAA.SNC..K.ND..DP..T..HM.SAA.A.FT..TATNPIWL.K..LQLD.RN..EK. | |
Retrocopy | *MEVASSRATFFAADSNCEKKSNDVVDPHFT-CHMTSAAVACFTIPTATNPIWLRKNWLQLDTRNY-EKQ |
Parental | MGAFECIRKVYQTDGLKGFYRGMSASYAGISETVIHFVIYESIKQKLLEYKIASTMENDEESVKEASDFV |
MG.F.C..KV.QT......YR..SAS....S...IH.VI..SIKQKLLE.K....ME.DEESVKE...FV | |
Retrocopy | MGTF*CAHKV*QTHAQRRLYRRRSASG---SQNFIHLVICRSIKQKLLE*KMTLIMEDDEESVKEIPNFV |
Parental | GMML |
G.ML | |
Retrocopy | GLML |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 74 .14 RPM |
SRP017611_kidney | 0 .52 RPM | 49 .26 RPM |
SRP017611_liver | 0 .10 RPM | 6 .57 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000010094 | 1 retrocopy | |
Felis catus | ENSFCAG00000027489 | 1 retrocopy |
retro_fcat_1680 ,
|
Macaca mulatta | ENSMMUG00000022153 | 1 retrocopy | |
Mus musculus | ENSMUSG00000032449 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000002085 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000007958 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000011669 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001759 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000003288 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000008292 | 1 retrocopy |