RetrogeneDB ID: | retro_fcat_1705 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E2:19410025..19410504(-) | ||
Located in intron of: | ENSFCAG00000014916 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNX3 | ||
Ensembl ID: | ENSFCAG00000024997 | ||
Aliases: | None | ||
Description: | sorting nexin 3 [Source:HGNC Symbol;Acc:11174] |
Percent Identity: | 88.27 % |
Parental protein coverage: | 99.38 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | AQVAASRRRLITKPQNLNDAYGPPSNF-LEIDVSNPQTVGVGRGRFTTYEIRVKTNLPIFKLKESTVRRR |
A...A...RLITKPQNLNDAYGPPSNF.LEIDVSNPQTVGVG.G.FTTYEIRVKTNLPIFKLKEST.RR. | |
Retrocopy | AETVADTGRLITKPQNLNDAYGPPSNF<LEIDVSNPQTVGVGQGGFTTYEIRVKTNLPIFKLKESTIRR- |
Parental | YSDFEWLRSELERESKVVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKQGLEQFINKVAGHPLAQNERC |
YSDFEWL.SELERESK.VVPPLPGKAFLRQLPFRGDDGIFDDNFIEERK.GL.QFINK.AGHPLAQNERC | |
Retrocopy | YSDFEWLQSELERESKAVVPPLPGKAFLRQLPFRGDDGIFDDNFIEERKRGLGQFINKLAGHPLAQNERC |
Parental | LHMFLQDEIIDKSYTPSKIRHA |
LHMFL.DEIIDK.YTPSK.RHA | |
Retrocopy | LHMFLRDEIIDKGYTPSKTRHA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .46 RPM | 42 .47 RPM |
SRP017611_kidney | 0 .00 RPM | 37 .10 RPM |
SRP017611_liver | 0 .00 RPM | 23 .15 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Erinaceus europaeus | ENSEEUG00000015256 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000003537 | 3 retrocopies | |
Felis catus | ENSFCAG00000024997 | 1 retrocopy |
retro_fcat_1705 ,
|
Loxodonta africana | ENSLAFG00000018131 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000005858 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000011755 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000008868 | 2 retrocopies |