RetrogeneDB ID: | retro_fcat_1768 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F1:11840625..11841095(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ERI3 | ||
Ensembl ID: | ENSFCAG00000005285 | ||
Aliases: | None | ||
Description: | ERI1 exoribonuclease family member 3 [Source:HGNC Symbol;Acc:17276] |
Percent Identity: | 68.1 % |
Parental protein coverage: | 62.55 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | RTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTC |
.T.EI.S.F..YVQPVVHPQL.PFCT.LT.IIQAM.DGQPSLQQV...VDE..AKE.L.DPNV....V.. | |
Retrocopy | QTTEIGSAFPTYVQPVVHPQLSPFCTQLTRIIQAMADGQPSLQQVV*TVDEQIAKESLFDPNVNFCHV-- |
Parental | GDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWPKNGLLDMNKGLSLQHIGRPHSGI-DDCK |
..W.L....P....YLGLPVA.YFKQWINLKKAYSF.MGCWP.NG.LD.N...SLQHIG..H....DD.. | |
Retrocopy | --WRLGLESPRPGPYLGLPVANYFKQWINLKKAYSFTMGCWPRNGFLDRNQDPSLQHIGGSHRST<DD-Y |
Parental | NIANIMKTLAYQGFIFKQTSKPF |
NIANI.KTLAYQG.IFKQTSKPF | |
Retrocopy | NIANIIKTLAYQGLIFKQTSKPF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 39 .83 RPM |
SRP017611_kidney | 0 .10 RPM | 20 .61 RPM |
SRP017611_liver | 0 .20 RPM | 10 .82 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000015559 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000003995 | 1 retrocopy | |
Felis catus | ENSFCAG00000005285 | 1 retrocopy |
retro_fcat_1768 ,
|
Pan troglodytes | ENSPTRG00000000655 | 1 retrocopy |