RetrogeneDB ID: | retro_fcat_1789 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F1:51351370..51352237(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000028088 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.21 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 4 |
Parental | MSSKEGSGG-FRKRKHDNFPHNQRREGKDVNSSSPVMLAFKSFQQELDARHDKYERLVKLSRDITVESKR |
MSSKEGSGG.FRK.KH...PHNQRREGKDV.S..P..LAFKSFQQ.LDA.HDK.ERLVKL..DITV...R | |
Retrocopy | MSSKEGSGG<FRKGKHNSSPHNQRREGKDVHSPAPMILAFKSFQQKLDAKHDK*ERLVKLYGDITVKHRR |
Parental | TIFLLHRITSAPDMEEILTESEVKLDGVRQKILQVAQELSGEDMHQFHRAITTGLQEYVEAVSFQHFIKT |
TIF.LH..TS.PDMEEILT.SE.KLDG.RQK.LQVAQELSGEDMHQFHRA.T.GL.EYV...SFQH.I.T | |
Retrocopy | TIFHLHWLTSSPDMEEILTDSEIKLDGIRQKVLQVAQELSGEDMHQFHRAVTIGLREYVDIISFQHLIRT |
Parental | RSLISMDEINKQLIFTTEEYGKENKTPSSDAQDKQFGTWRLKITPVDYLLGVADLTGELMRMCINSVGNG |
.SL..MDEI.K.LIFTTE.YGKEN.TPS.DAQDK.FGTW.LKITPVDYLLGVA.LTGELM.MCIN..G.G | |
Retrocopy | *SLTNMDEI-K*LIFTTE*YGKENETPSFDAQDKEFGTWKLKITPVDYLLGVAHLTGELMQMCINRWGKG |
Parental | DIDT-PFEVSQFLRQVYDGFSFIGNT-GPYEVSKKLYTLKQSLAKVENAC-YALRVRGSEIPKHMLADVF |
DIDT.PFEVSQFL.QVYDGF.F.GN..GPY.VSKKLYTL.QSLAKV.N...YA..VRGSEIP.HMLADVF | |
Retrocopy | DIDT>PFEVSQFLHQVYDGFLFTGNM<GPYAVSKKLYTLRQSLAKVDNTW>YAFKVRGSEIPEHMLADVF |
Parental | SVKTEMIDQEEGIS |
SVKTEMID...GIS | |
Retrocopy | SVKTEMID*DNGIS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 31 .10 RPM |
SRP017611_kidney | 0 .00 RPM | 30 .81 RPM |
SRP017611_liver | 0 .00 RPM | 19 .51 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000002637 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000006963 | 1 retrocopy | |
Felis catus | ENSFCAG00000028088 | 1 retrocopy |
retro_fcat_1789 ,
|
Myotis lucifugus | ENSMLUG00000015591 | 1 retrocopy | |
Mus musculus | ENSMUSG00000056820 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000005575 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000024989 | 1 retrocopy |