RetrogeneDB ID: | retro_fcat_1841 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F2:26109538..26109885(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TESC | ||
Ensembl ID: | ENSFCAG00000002633 | ||
Aliases: | None | ||
Description: | tescalcin [Source:HGNC Symbol;Acc:26065] |
Percent Identity: | 59.32 % |
Parental protein coverage: | 53.42 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | PIDTTMDEEQVQLCRKEKLRFLFHMYDSDSDGRITLEEYRNVVEELLSGNPHIEKESARSIADGA-MMEA |
P...T.D........KEK.RFLFH..DS.S...IT.EEY.NV..E.LS.N.H.EK.SA.SI.DGA.MME. | |
Retrocopy | PSCPTYDPSTPPWSQKEKVRFLFHT*DSVSKIHITQEEYENVGKEVLS-NCHKEKDSAHSITDGA<MMEV |
Parental | ASVCVGQMEPDQVYEGITFDDFLKIWQGIDIETKMHVRFLNMETIALC |
A..C..QME.DQ.YEG.TF.DFLKIWQ.IDI..KMH..F..M.TIALC | |
Retrocopy | ARTCMRQMEVDQEYEGVTFNDFLKIWQMIDIMDKMHFSFIKMDTIALC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 16 .53 RPM |
SRP017611_kidney | 0 .00 RPM | 1 .13 RPM |
SRP017611_liver | 0 .00 RPM | 0 .61 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000012517 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000009300 | 1 retrocopy | |
Equus caballus | ENSECAG00000011177 | 1 retrocopy | |
Felis catus | ENSFCAG00000002633 | 1 retrocopy |
retro_fcat_1841 ,
|
Myotis lucifugus | ENSMLUG00000001775 | 1 retrocopy | |
Mus musculus | ENSMUSG00000029359 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000001128 | 1 retrocopy |