RetrogeneDB ID: | retro_fcat_1898 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:18836026..18836862(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000027648 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTGR1 | ||
Ensembl ID: | ENSFCAG00000004339 | ||
Aliases: | None | ||
Description: | prostaglandin reductase 1 [Source:HGNC Symbol;Acc:18429] |
Percent Identity: | 83.93 % |
Parental protein coverage: | 84.8 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | RVAAKRLKEGDTMMGQQVARVVESKNSAFPTGTMVVASSGWTTHSISDGKDLEKLPAEWPDTLPVSLALG |
RV.A.RL.EG..MMGQQVA.VV.SKNSAFPTGTMVVASSGWTTHS.SDGKDLEKLPAEWPDTLP.SLALG | |
Retrocopy | RVTA*RLNEGNMMMGQQVATVVQSKNSAFPTGTMVVASSGWTTHSVSDGKDLEKLPAEWPDTLPLSLALG |
Parental | TVGMTGLTAYFGLLDICGVKGGETVMVNAAAGAVGSAVGQIAKLKGCK-VVGAAGSDEKVAYLKKLGYDV |
..GMTGLTAYFGL.DICGVK.GE.V.VNAA.GA.GSAVGQ.AKL...K.VVGAAGS.EK.AYLK.LG.D. | |
Retrocopy | MIGMTGLTAYFGLPDICGVKSGEMVQVNAALGAWGSAVGQTAKLRTAK<VVGAAGSGEKLAYLKMLGCDG |
Parental | AFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNIVIPQMKKFGRIAICGAISVYNTTRPLPPGPPPEN |
AFNYKTVESLEE...KASPDGYDCYFDNVGGEFSNIVI.Q.KKFGR.AICGAISVYN.TRPLPPGPPPEN | |
Retrocopy | AFNYKTVESLEENFEKASPDGYDCYFDNVGGEFSNIVISQTKKFGRTAICGAISVYNPTRPLPPGPPPEN |
Parental | IIYQQLRMEGFIVTRWQGDVRQKALKDLLTWVLEGKIQYREYITEGFENMPAAFMGMLKGENLGKTIVKA |
I.YQQ.RMEGFI.TRWQGDV.QKALKDLL.WVLEGKIQ..E.ITE.FE.MPAAFMGMLKG.NLGKTIVKA | |
Retrocopy | ILYQQHRMEGFIITRWQGDVCQKALKDLLRWVLEGKIQSHENITEEFETMPAAFMGMLKGANLGKTIVKA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 1 .72 RPM |
SRP017611_kidney | 0 .00 RPM | 44 .62 RPM |
SRP017611_liver | 0 .00 RPM | 23 .35 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000003000 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000017571 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000006136 | 1 retrocopy | |
Felis catus | ENSFCAG00000004339 | 1 retrocopy |
retro_fcat_1898 ,
|
Homo sapiens | ENSG00000106853 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017487 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000011144 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019499 | 1 retrocopy |