RetrogeneDB ID: | retro_fcat_424 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:49984035..49984408(+) | ||
Located in intron of: | ENSFCAG00000005402 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPS7 | ||
Ensembl ID: | ENSFCAG00000028759 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein S7 [Source:HGNC Symbol;Acc:14499] |
Percent Identity: | 69.23 % |
Parental protein coverage: | 52.89 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | LLRFPGLTQVRGSRYGPEYKDPQVDK-EYYRKPLAELTEE-EKYERELRKTQHIKAAPASKTSSVFEDPV |
.L..P.LTQVR.S..GPEY.DPQ......YRKP...L.E..EKYE..LRKTQ.IKA.PA.KTSSV.EDP. | |
Retrocopy | ILGLPALTQVR*SHSGPEYRDPQINM<DNYRKP---LSEQ<EKYEQKLRKTQLIKADPATKTSSVYEDPK |
Parental | ISKFTNMIMKGGNKVLARSLMAQTLEAVKRKQFEKYHAASAEERASIERNPYTIFHQALK |
ISKFTNM.MKGGN.VLAR.LM..TLE.VKRKQFEKYHAASAEE.A.I..NPY.I.H.ALK | |
Retrocopy | ISKFTNMMMKGGNEVLARPLMMHTLETVKRKQFEKYHAASAEEPATIKHNPYAILHHALK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 35 .35 RPM |
SRP017611_kidney | 0 .00 RPM | 52 .77 RPM |
SRP017611_liver | 0 .00 RPM | 24 .26 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000009287 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000004752 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000014458 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000015775 | 1 retrocopy | |
Felis catus | ENSFCAG00000028759 | 2 retrocopies |
retro_fcat_2013, retro_fcat_424 ,
|
Loxodonta africana | ENSLAFG00000002873 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000012264 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000013928 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017928 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000015942 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000008433 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000015200 | 2 retrocopies |