RetrogeneDB ID: | retro_fcat_452 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:115092426..115092733(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000031083 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SNCA | ||
Ensembl ID: | ENSFCAG00000011488 | ||
Aliases: | None | ||
Description: | synuclein, alpha (non A4 component of amyloid precursor) [Source:HGNC Symbol;Acc:11138] |
Percent Identity: | 91.26 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MDVFMKGLSKAKEGVVAAAEKTKQGVAEAAGKTKEGVLYVGSKTKEGVVHGVTTVAEKTKEQVTNVGEAV |
MDVFMKGLSKAKE.VVAAAEKTKQGVAEAAGKTKEGV.YVGSKTKEG.VH.VTTVAEKTKEQVTNVGE.V | |
Retrocopy | MDVFMKGLSKAKEEVVAAAEKTKQGVAEAAGKTKEGVFYVGSKTKEGAVHDVTTVAEKTKEQVTNVGEVV |
Parental | VTG-VTAVAQKTVEGAGSIAAATGFGKKDQLGK |
.TG..TAV.QKTVEGAGSIAAATGFGKKDQLGK | |
Retrocopy | MTG>MTAVTQKTVEGAGSIAAATGFGKKDQLGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 9 .53 RPM | 70 .36 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .20 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007186 | 1 retrocopy | |
Felis catus | ENSFCAG00000011488 | 1 retrocopy |
retro_fcat_452 ,
|
Microcebus murinus | ENSMICG00000005634 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000023825 | 1 retrocopy |