RetrogeneDB ID: | retro_fcat_479 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:70079276..70079648(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL16 | ||
Ensembl ID: | ENSFCAG00000007540 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L16 [Source:HGNC Symbol;Acc:14476] |
Percent Identity: | 79.37 % |
Parental protein coverage: | 52.77 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | DSWVASPASAGLKTLLPVPAFEDVSIPEKPKLRFVERVPL-VPKVRREPKNLSDIRGPSAEATEFTEGSF |
DS..A.PA.AGLKTLL.VP.F.DVSIPEK..LRFVER.PL.VPK.RREPK..SDI.GPS.EATEFTEG.F | |
Retrocopy | DS*AAPPACAGLKTLLLVPTFKDVSIPEKLMLRFVERAPL<VPKMRREPKYSSDIWGPSIEATEFTEGIF |
Parental | AILALGGGYLHWGHFEMMRLTINRSLDPKN-MFALWRVPAPFKPITRKGMGQRMGG |
AILALGGGYLHWGHFEM..LTIN.SLDPKN..FAL.RVPAPFKP.T.KGMGQ.MGG | |
Retrocopy | AILALGGGYLHWGHFEMRHLTINHSLDPKN>QFAL*RVPAPFKPTTHKGMGQCMGG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 20 .43 RPM |
SRP017611_kidney | 0 .00 RPM | 49 .67 RPM |
SRP017611_liver | 0 .00 RPM | 21 .03 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000014289 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000031711 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000015111 | 1 retrocopy | |
Felis catus | ENSFCAG00000007540 | 2 retrocopies |
retro_fcat_479 , retro_fcat_639,
|