RetrogeneDB ID: | retro_fcat_480 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:71156874..71157553(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL46 | ||
Ensembl ID: | ENSFCAG00000014966 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L46 [Source:HGNC Symbol;Acc:1192] |
Percent Identity: | 59.23 % |
Parental protein coverage: | 81.49 % |
Number of stop codons detected: | 9 |
Number of frameshifts detected | 4 |
Parental | MAAPVRRTLLQA-AKGWRRFEGHWAG-SLGSRSLAPAAAPLSSGSPWRLVGALCLQRPPLVSKPLTPLQE |
MA.P.R.TLL...A..W..FEG.WAG.SL.S..L...A...SSGS...L...LCLQ..P..S........ | |
Retrocopy | MAVPIRQTLLRG>ANDW*QFEGLWAG<SLDSLGLTVVASSWSSGSL*HLLHMLCLQQLPVASSWPLSHRK |
Parental | EMAALLQQIEVER-SMYSDHELRALDEAQRLAKRKADLYDEEEDEQNVLLVQDLEDVWEQKFLQFKPGAR |
....LLQ.I..ER.S..SDHE...LD.A...AK.KAD..DEEE..QN.LLV.DLED.WEQK.L.FKPGA. | |
Retrocopy | R*RSLLQKIKMER<SLHSDHEPGTLDQA**PAKKKADFHDEEE--QNILLV*DLEDIWEQKVLPFKPGAH |
Parental | ITEADEKNDRTSLHRKLDRNLVLLVKEKLGDKDVWILPQAEWQPGETLRGTAERTLATLSEKKVEAKFLG |
I.EAD.KND..SLH.K..RNLVLLVKEKLGD.DVWIL.Q.EWQP.ET..GTAE..LATLSEK..EAK.L. | |
Retrocopy | IPEADKKNDQISLHQKMGRNLVLLVKEKLGDQDVWILLQEEWQPRETF*GTAE*ILATLSEKDMEAKSLA |
Parental | NAPCGHYKF-KFPQAMRTESSLG |
..PCGHYKF..FPQAM.T....G | |
Retrocopy | IVPCGHYKF<QFPQAMQTK*AQG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 8 .38 RPM |
SRP017611_kidney | 0 .00 RPM | 13 .19 RPM |
SRP017611_liver | 0 .00 RPM | 8 .59 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000013019 | 1 retrocopy | |
Felis catus | ENSFCAG00000014966 | 1 retrocopy |
retro_fcat_480 ,
|
Microcebus murinus | ENSMICG00000015826 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000004736 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018547 | 1 retrocopy |