RetrogeneDB ID: | retro_fcat_583 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:156235684..156236664(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DDX43 | ||
Ensembl ID: | ENSFCAG00000031631 | ||
Aliases: | None | ||
Description: | DEAD (Asp-Glu-Ala-Asp) box polypeptide 43 [Source:HGNC Symbol;Acc:18677] |
Percent Identity: | 74.78 % |
Parental protein coverage: | 51.47 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 8 |
Parental | QTWPIVLQGIDLIGVSQTGT-GKTLSYLMPGF-IHLDLQPVIREKRNGPGMLVLIPTRELALQVQVECSK |
Q.WPIVLQG.DLIG..QTGT.G..LSYL.PG..IHLDLQP.IREK.NGP.MLVL.PTR.L.L.V..ECS. | |
Retrocopy | QPWPIVLQGKDLIGLAQTGT>GR-LSYLVPGL<IHLDLQPIIREKKNGPRMLVLTPTR*LGLHVEAECSM |
Parental | YSYKGLKSVCIYGGGDRNGQIQELKKGVDIIIATPGRLNDLQMNNFVDLRSITYLVLDEADKMLDMGFEP |
YSYKGLKSVCIYG.GDRNG.IQ.LKKGVDII..TPGRLNDLQM.N...LRSITYLVLDE.DK.LDMGF.P | |
Retrocopy | YSYKGLKSVCIYGSGDRNGKIQ*LKKGVDIIV-TPGRLNDLQMSNCSNLRSITYLVLDEVDKKLDMGFDP |
Parental | -QIMKILLDVR-PDRQTIMTSATWPYAVRRLAQSYLKEPMIVYVGTLDLIAVSTVKQNIIVTTEEEKRSH |
.QI..ILLDV..PDRQTIMTSATW.YAVR.LAQ.YLK.PMIVYVGTLDL.AVST.KQN.IVTTEEEK.SH | |
Retrocopy | <QIITILLDVH<PDRQTIMTSATWSYAVRELAQFYLKKPMIVYVGTLDLVAVSTMKQNVIVTTEEEK*SH |
Parental | IQTFLENMSPKDKVIVFVSRKAVADHLSSDLILQHISV-ESLHGNREQ-KDREKALENFKTGKIRILIAT |
IQ.FLEN.SPKDKVI.FVSRK......SSD.IL.H..V.ESLHG.R.Q....E..LE.FKTG..RILIA. | |
Retrocopy | IQVFLENLSPKDKVIMFVSRKVCS---SSDPILRHGLV>ESLHGDRKQ<DGQERTLEKFKTGRVRILIAS |
Parental | DLGSRGLDVHDITHVYNYDFPR-NIEEYVHRVGRTGRAGKT-GMSITLITRNDWRIAGELI |
DL.S.GL.VHDITHVYNYDFP..NI.E.VHRVG.T.RAG.T...S.TLITRNDWR.AGELI | |
Retrocopy | DLTS*GLNVHDITHVYNYDFPG<NIKECVHRVGCTERAGRT<LTSTTLITRNDWRVAGELI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000007851 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000009966 | 2 retrocopies | |
Equus caballus | ENSECAG00000017971 | 1 retrocopy | |
Felis catus | ENSFCAG00000003512 | 1 retrocopy | |
Felis catus | ENSFCAG00000031631 | 1 retrocopy |
retro_fcat_583 ,
|
Homo sapiens | ENSG00000080007 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000016092 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000017145 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000018546 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000004342 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000001209 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000006338 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000013660 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000005962 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000016774 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000018344 | 1 retrocopy |