RetrogeneDB ID: | retro_fcat_626 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:73324639..73325266(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000015089 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.65 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | PSSLQTSEFDSSDEEPIEDEQTPMQISWLPLSRVNCSQFLGLCALPGCKFKNVRRNIQKDTEELKSYGIQ |
PSSLQTSE.D.S.EEPIEDEQTP.QI..LPLSRVNCSQFLGLCALP..KFKNVRR..Q..TEEL.S..I. | |
Retrocopy | PSSLQTSECDASEEEPIEDEQTPIQIP*LPLSRVNCSQFLGLCALPDGKFKNVRRDTQEGTEELRSCDIR |
Parental | DIFVFCTRGELSKYRVPNLLDLYHQYGIITHHHPIPD-GGTPNIASCCEIMEELAICLKNNRKTL-IHCY |
..F.FC.RGELSKYRVPNL.DLYH.YGIITH.HPIPD..GTP..A.CCEIMEEL.ICL....K.L.IHCY | |
Retrocopy | GVFIFCPRGELSKYRVPNLEDLYHHYGIITHDHPIPD<RGTPDVAICCEIMEELIICLTKELKNL>IHCY |
Parental | GGLGRSCL-VAACLLLYLSDTVSPEQAIDSLRDLRGSGAIQ-TIKQYNYLHEFRDKLAAHLSSRDSLSRS |
GGLGRSCL.V..CLLL.LS...S..QA.DSL.D.RGSGAIQ.TIKQ..Y.HEFRDKLA.HL.SR.SLSRS | |
Retrocopy | GGLGRSCL<VPTCLLLFLSHGASSQQAVDSLGDPRGSGAIQ>TIKQHHYFHEFRDKLAVHLASRESLSRS |
Parental | VSR |
VSR | |
Retrocopy | VSR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .00 RPM |
SRP017611_liver | 0 .00 RPM | 0 .30 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012823 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000018617 | 1 retrocopy | |
Felis catus | ENSFCAG00000015089 | 2 retrocopies |
retro_fcat_135, retro_fcat_626 ,
|
Loxodonta africana | ENSLAFG00000014833 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002497 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000015559 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000008977 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000010203 | 2 retrocopies |