RetrogeneDB ID:

retro_fcat_7

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:A1:42242257..42245356(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSFCAG00000013764
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSFCAG00000023574
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_fcat_7
ATGGACCTGAGGGATATTTACCTGTTGGCTGCTCTGATTGCCTGTTTAAGGCTGGATTCCGCAATAGCTCAAGAACTTAT
TTACACTATTAGAGAGGAATTGCCTGAAAATGTGCCCATAGGAAACATACCAAAGGATCTGAACATTTCTCACATCAATG
CTGCCACAGGGACCAGTGCCAGCCTTGTCTACAGACTGGTTTCTAAAGCTGGGGATGCCCCTTTGGTGAAAGTATCCAGT
AGCACTGGGGAAATTTTCACAACCTCCAATAGAATAGACAGAGAAAAACTCTGTGCTGGAGCCTCTTATGCTGAGGAGAA
TGAGTGTTTCTTTGAACTTGAGGTAGTGATCCTCCCCAATGATTTTTTCAGGCTGATCAAAATAAAAATAATTGTCAAGG
ATACCAATGATAATGCCCCCATGTTTCCATCCCCTGTCATCAATATTTCCATTCCAGAAAACACTTTGATCAACAGCCGC
TTTCCAATTCCATCAGCAACAGATCCTGACACAGGCTTCAATGGTGTACAGCATTATGAATTGTTAAATGGGCAGAGTGT
TTTTGGACTGGATATCGTGGAAACTCCGGAGGGAGAGAAGTGGCCGCAATTGATTGTTCAGCAAAACTTGGACAGAGAAC
AGAAAGATACCTATGTGATGAAAATCAAAGTAGAGGATGGAGGCACTCCACAGAAATCCAGCACGGCCATACTGCAGGTC
ACAGTAAGTGATGTAAATGACAACAGGCCAGTGTTTAAAGAGGGTCAAGTGGAGGTGCATATTCCAGAGAATGCTCCTGT
GGGCACCTCTGTAATTCAGCTCCATGCCACTGATGCAGATATAGGCAGTAATGCTGAAATCCGGTACATTTTTGGTGCCC
AGGTCGCCCCTGCAACCAAAAGGCTCTTTGCTTTAAATAATACTACTGGGCTGATTACAGTTCAGAGGTCCCTAGATCGA
GAGGAGACAGCCATTCACAAAGTGACAGTGCTGGCTAGTGATGGCAGCTCCACTCCTGCTCGAGCAACGGTTACCATCAA
TGTCACTGATGTAAATGATAACCCTCCTAACATAGACCTCAGGTACATTATAAGTCCCATCAATGGCACAGTGTATTTAT
CTGAGAAAGATCCTGTCAATACAAAGATTGCCCTAATTACAGTTTCAGATAAGGACACAGATGTGAATGGCAAAGTGATC
TGTTTTATTGAAAGAGAGGTCCCATTTCATTTGAAGGCAGTATACGATAACCAATATTTGTTAGAGACCTCCTCTTTGTT
GGACTATGAGGGCACCAAAGAATTCAGCTTTAAAATTGTTGCCTCTGATTCTGGGAAACCCAGTTTAAATCAGACTGCCC
TGGTAAGGGTTAAGCTTGAGGACGAAAATGACAACCCACCAATTTTCAACCAGCCTGTAATTGAGCTGTCAGTTTCTGAA
AACAACCGACGTGGGTTATACTTAACAACTATTAGTGCCACAGATGAAGACAGTGGGAAAAATGCGGACATTGTTTATCA
GCTTGGACCGAATGCCTCCTTCTTTGATTTGGACCGAAAGACAGGAGTTTTGACAGCCTCCAGAGTCTTTGACAGAGAAG
AACAGGAGCGGTTCATTTTTACAGTAACTGCCAGGGACAATGGAACCCCTCCCCTCCAAAGCCAAGCGGCCGTGATAGTT
ACTGTTCTGGATGAGAATGACAATAGCCCCAAGTTTACTCATAATCATTTTCAATTTTTTGTGTCTGAGAATCTGCCAAA
GTATAGTACTGTGGGGGTAATCACAGTGACAGATGCAGATGCTGGAGAGAATAAAGCTGTGACTCTCTCCATTCTAAATG
ACAATGATAATTTTGTGCTGGATCCCTATTCTGGAGTCATAAAGTCAAATGTCTCATTTGATAGAGAGCAGCAGAGTTCC
TACACTTTTGATGTCAAAGCCACTGATGGAGGACAACCACCTCGTTCCTCCACTGCAAAAGTAACTATCAATGTCATGGA
TGTCAATGACAATAGCCCAGTTGTCATTTCTCCACCTTCCAACACTTCTTTTAAGTTGGTACCCCTCTCAGCCATTCCTG
GCTCTGTGGTAGCAGAAGTTTTTGCGGTGGATATCGACACTGGGATGAACGCCGAACTGAAGTATACAATTGTGAGTGGG
AACAACAAAGGCTTGTTTCGGATCGATCCAGTAACAGGTAACATCACTCTGGAAGAGAAGCCAGCACCTACTGATGTGGG
CTTGCACCGTTTGGTGGTCAATATAAGTGACCTGGGATACCCTAAGTCTTTGCACACACTCGTGCTTGTTTTTCTTTACG
TTAATGACACCGCTGGGAATGCCTCCTATATCTATGACTTGATTCGCAGGACTATGGAGACCCCACTGGATAGGAACATA
GGGGACAGTAGCCAACCCTATCAAAATGAGGACTATCTCACCATCATGATTGCCATCGTCGCAGGGGCCATGGTGGTCAT
AGTGGTGATCTTCGTCACCGTCCTGGTGCGATGTCGCCATGCATCGAGGTTCAAAGCAGCTCAGAGGAGCAAGCAAGGTG
CTGAGTGGATGTCCCCAAACCAGGAGAACAAACAAAACAAGAAAAAGAAAAGGAAGAAAAGAAAGTCTCCCAAGAGCTCT
CTTTTGAACTTTGTTACAATTGAAGAGTCCAAACCTGACGATGCAGTTCACGAACCTATCAATGGGACAATAAGCCTGCC
CGCTGAGCTGGAGGAGCAAAGTATAGGAAGATTTGACTGGGGCCCAGCCCCTCCAACAACCTTCAAGCCTAACAGCCCTG
ACCTGGCCAAGCACTACAAATCTGCTTCTCCACAGCCTGCTTTTCATCTTAAACCAGACACTCCGGTTTCCGTGAAAAAG
CATCATGTGATTCAGGAACTCCCTTTGGACAACACCTTTGTCGGGGGTTGTGACACCCTCTCCAAACGCTCTTCCACTAG
TTCAGATCACTTCAGTGCCTCAGAGTGCAGTTCCCAAGGAGGCTTCAAGACAAAGGGCCCCTTACACACCAGACAGGTAA
ACGAGCACTTTTACTGGTCTATAAGTACTGCATACAAGTGCCCAGTCAACCAGTATTAA

ORF - retro_fcat_7 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 57.36 %
Parental protein coverage: 99.71 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalLSGTYIFAVLLACVVFQSG-AQEKNYTVQEEMPENVLIGDLLKELNLSLIPEKSLTSP-MQFKLVYKTGD
L...Y..A.L.AC....S..AQE..YT..EE.PENV.IG...K.LN.S.I.....TS......LV.K.GD
RetrocopyLRDIYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSASLVYRLVSKAGD
ParentalVPLIRIEEGTGEIFTAGARIDREKLCV--DILVETRCFYEVEVAVLPDEIFRLVKIRFLLEDINDNAPLF
.PL......TGEIFT...RIDREKLC.......E..CF.E.EV..LP...FRL.KI.....D.NDNAP.F
RetrocopyAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPNDFFRLIKIKIIVKDTNDNAPMF
ParentalPATVINISIPENSAINSRYALPAAIDPD-GINGVQNYQLIKGQSMFGLDVIETPEGDKTPQIIVQKELDR
P..VINISIPEN..INSR...P.A.DPD.G.NGVQ.Y.L..GQS.FGLD..ETPEG.K.PQ.IVQ..LDR
RetrocopyPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYELLNGQSVFGLDIVETPEGEKWPQLIVQQNLDR
ParentalEEKDTYVMKVKVEDGGFPRRSS-AILQINVADTNDNHPVFKENEIEVSIPENAPVGTSVTQLHATDADIG
E.KDTYVMK.KVEDGG.P..SS.AILQ..V.D.NDN.PVFKE...EV.IPENAPVGTSV.QLHATDADIG
RetrocopyEQKDTYVMKIKVEDGGTPQKSSTAILQVTVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIG
ParentalENAKIHFYFSNLVSNITKKLFHLNNNTGLITIKEPLDREESPNHKLQVLASDGGLMPARAMVLVNVTDIN
.NA.I...F...V...TK.LF.LNN.TGLIT....LDREE...HK..VLASDG...PARA.V..NVTD.N
RetrocopySNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVN
ParentalDNVPSIDIRYIINPINGTVILSENAPLHTKIALITVTDKDADHNGRVTCFTDHEVPFRLRPVFSNQFLLE
DN.P.ID.RYII.PINGTV.LSE..P..TKIALITV.DKD.D.NG.V.CF...EVPF.L..V..NQ.LLE
RetrocopyDNPPNIDLRYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYLLE
ParentalTAAYLDYESTREYAIKLLAVDAGKPPLNQSSMLLVKGKDENDNAPVFIQPFISLSVPENNSPGTKLTKLS
T...LDYE.T.E...K..A.D.GKP.LNQ.....VK..DENDN.P.F.QP.I.LSV.ENN..G..LT..S
RetrocopyTSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSENNRRGLYLTTIS
ParentalAVDADSGHNAEINYLLGVDAPSEFNLDHRTGILTAGKKLDREKQEKYSSTVLAKYNGIPSFMTNATVLLT
A.D.DSG.NA.I.Y.LG..A.S.F.LD..TG.LTA....DRE.QE....TV.A..NG.P.....A.V..T
RetrocopyATDEDSGKNADIVYQLGPNA-SFFDLDRKTGVLTASRVFDREEQERFIFTVTARDNGTPPLQSQAAVIVT
ParentalILDQNDNSPIFTHNEYNFCVPENLPRHGTAGLITVTDPDYGENSTVTLSILYVNDDFTIDPQIGVIQPNI
.LD.NDNSP.FTHN...F.V.ENLP...T.G.ITVTD.D.GEN..VTLSIL..ND.F..DP..GVI..N.
RetrocopyVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDADAGENKAVTLSILNDNDNFVLDPYSGVIKSNV
ParentalSFDREKQESYTFYVKAEDGGKVSHSSTAKVTINVVDVNDNKPVLL-PSSNNSYELVLPSTNPGTVVFTVV
SFDRE.Q.SYTF.VKA.DGG....SSTAKVTINV.DVNDN.PV...P.SN.S..LV..S..PG.VV..V.
RetrocopySFDREQQSSYTFDVKATDGGQPPRSSTAKVTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVF
ParentalAIDDDTGMNAELHYNIVGGNTKGLFVIDQTTGNITLKEKCVVTDLGLHRLVVKAEDLGQPDSLFNVVIVN
A.D.DTGMNAEL.Y.IV.GN.KGLF.ID..TGNITL.EK...TD.GLHRLVV...DLG.P.SL...V.V.
RetrocopyAVDIDTGMNAELKYTIVSGNNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVF
ParentalLFVNESVTNATLIHELVHKNIEIPVTPNTETTDASSPTSDYVKITVAIIAGTITVIIVIFITAVVRCCQS
L.VN....NA..I..L.....E.P...N...........DY..I..AI.AG...VI.VIF.T..VRC...
RetrocopyLYVNDTAGNASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIVAGAMVVIVVIFVTVLVRCRHA
ParentalPHLKTAHKNKQNSEWVTPNPENKQKKKKKKKKKNAPKSLLLNFATIEETKADDSENDGNSATLDFPIQLE
...K.A...KQ..EW..PN.ENKQ.KKKK.KK...PKS.LLNF.TIEE.K.DD........T...P..LE
RetrocopySRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPINGTISLPAELE
ParentalEQTMGKYNWGTI-PTTFKPDIPDLAWHYKSASPQPAFQIQPETPLNL-KHHIIQELPLDNTFV-ACDSIS
EQ..G...WG...PTTFKP..PDLA.HYKSASPQPAF...P.TP....KHH.IQELPLDNTFV..CD..S
RetrocopyEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKKHHVIQELPLDNTFVGGCDTLS
ParentalKCSSSSSDPYSVSGYSYSVTTFKTPASIHTRPTHRHTQWSIAQQSKIMIHTH
K.SS.SSD..S.S..S.S...FKT....HTR....H..WSI....K......
RetrocopyKRSSTSSDHFSASECS-SQGGFKTKGPLHTRQVNEHFYWSISTAYKCPVNQY

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 114 .08 RPM 7 .69 RPM
SRP017611_kidney 2 .27 RPM 2 .37 RPM
SRP017611_liver 0 .71 RPM 0 .30 RPM

ChIP-Seq - click to see more details

Felis catus was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_fcat_7 retrocopy.

TSS - click to see more details

Felis catus was not studied using FANTOM5 data.

Lab - click to see more details

retro_fcat_7 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Felis catus ENSFCAG00000023574 1 retrocopy
retro_fcat_7 ,


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