RetrogeneDB ID: retro_fcat_741

Retrocopy location

• Organism: Cat (Felis catus)
• Coordinates: B2:146422717..146423097(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FGGY
• Ensembl ID: ENSFCAG00000030121
• Aliases: None
• Description: FGGY carbohydrate kinase domain containing [Source:HGNC Symbol;Acc:25610]

Sequence

>retro_fcat_741
CTGTCTCAGGACCTCAATGATCTTGCCATTCTCTATCTGGCCACAGTTCAAGCCATTGCTTTTGGGACCCACCTCATTAT
AGAGACCTTGGGGGTGGTGGGGCACTGTATCAGCGCTGTTTTCCTGTGTGGAGACCTGAGCAGGAATCCCCTTTTGTGCA
GGTGCACGCGGACATTACAGGCAGGCCTGTGGTCCTGTTGCAAGAGGTGGAGTCTGTTCTTGTGGGCGCTGTTATTCTGG
GTGCCGGTGCCTCTGGGGATTTCACTTCTGTACCGGAGGCAATGGCTAGAATGAGCAAAGTTGGGAAAGTCGTGTTTCCT
AGACTGGAGGATAAAAGATACTATGACAAGAAATATGAAGTATTCCTGAAGCTGGTTGAG

Alignment

ORF - retro_fcat_741 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.62 %
• Parental protein coverage: 50.2 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LSQDLDDLAILYLATVQAIAFGTRLIIEALEAAGHSLSTLFLCGGLSKNPL-FVQMHADITGMPVVLSQE
          LSQDL.DLAILYLATVQAIAFGT.LIIE.L...GH..S..FLCG.LS.NPL.FVQ.HADITG.PVVL.QE
Retrocopy LSQDLNDLAILYLATVQAIAFGTHLIIETLGVVGHCISAVFLCGDLSRNPL<FVQVHADITGRPVVLLQE

Parental  VESVLVGAAILGACASGDFASVQVYLASVS-VGHSVFLHLLSTRAAEVKQQISKKVTE
          VESVLVGA.ILGA.ASGDF.SV....A..S.VG..VF..L...R....K.....K..E
Retrocopy VESVLVGAVILGAGASGDFTSVPEAMARMSKVGKVVFPRLEDKRYYDKKYEVFLKLVE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	0.00 RPM	2.98 RPM
SRP017611_kidney	0.00 RPM	13.09 RPM
SRP017611_liver	0.00 RPM	17.99 RPM

ChIP-Seq

Felis catus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_fcat_741 retrocopy.

TSS

Felis catus was not studied using FANTOM5 data.

Lab

retro_fcat_741 was not experimentally validated.

Homology

Retrocopy orthology:

Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000030121	1 retrocopy	retro_fcat_741 ,