RetrogeneDB ID: | retro_fcat_843 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:64284731..64285259(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPS26 | ||
Ensembl ID: | ENSFCAG00000028185 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein S26 [Source:HGNC Symbol;Acc:14045] |
Percent Identity: | 67.42 % |
Parental protein coverage: | 83.41 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | AKSKLGRVTTPPAVDPVEFFVLTERYRQYRQTVRALRLEFVSEVRKKMHEARAGVLAERKALQEATEHRD |
AKSK.G.V.TPP.V..VE.F..TE..RQYRQ..RALRLEFVS.V.KK.HEA.AG.LAE.K.LQ.A..... | |
Retrocopy | AKSKVGGVATPPEVGSVELFRQTEHFRQYRQSMRALRLEFVSKVWKKVHEAWAGNLAEGKVLQDAADYSN |
Parental | LMAWNQAENQRLHELRLARLRQEA--REQEQRQAEEKARRA-REAQAWAQLKEQEAL-QLQEEAKNFITR |
L.AWN.AENQ.LHEL.L..LRQEA..REQEQ.Q.EEKA..A.REAQAW.Q.K.QE...Q.QEEAK.FIT. | |
Retrocopy | LPAWNRAENQQLHELWLGGLRQEAEVREQEQWQVEEKAPWA<REAQAWEQPKDQEGA>QRQEEAKHFIT* |
Parental | ENLEARVEEALDSPKSYNWAITREGLV---VRPQHKGS |
ENLEA.VEE..DS.KSYNWAITREGLV......QHKGS | |
Retrocopy | ENLEAWVEEVFDSLKSYNWAITREGLVPGQATAQHKGS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 15 .95 RPM |
SRP017611_kidney | 0 .00 RPM | 26 .90 RPM |
SRP017611_liver | 1 .31 RPM | 9 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000024910 | 2 retrocopies | |
Felis catus | ENSFCAG00000028185 | 1 retrocopy |
retro_fcat_843 ,
|
Loxodonta africana | ENSLAFG00000007936 | 1 retrocopy | |
Mus musculus | ENSMUSG00000037740 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000027041 | 1 retrocopy |