RetrogeneDB ID: | retro_fcat_96 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E3:20155739..20156786(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000030021 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SEPHS1 | ||
Ensembl ID: | ENSFCAG00000003921 | ||
Aliases: | None | ||
Description: | selenophosphate synthetase 1 [Source:HGNC Symbol;Acc:19685] |
Percent Identity: | 82.65 % |
Parental protein coverage: | 82.98 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PRLGIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLGISNK |
P.LGIGMD.CVIPLRHGGLSLVQTTD..YP.V.DPYMMGRIACANVLSDLYAMG.TECDNMLMLL..S.. | |
Retrocopy | PALGIGMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQS |
Parental | MTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVCQPNEFIMPDNAVPGDVLVLTK |
MT..ER.K..PL.I.GF.DAAEE.GT.VTGGQTV.NPWI..GGVAT.VCQPNEFIMPD.AV.GDVLVLTK | |
Retrocopy | MTEEEREKITPLMIKGFRDAAEEGGTAVTGGQTVVNPWIIVGGVATVVCQPNEFIMPDSAVVGDVLVLTK |
Parental | PLGTQVAVAVHQWLDIPEKWNKIKLVVTQEDVELAYQEAMMNMARLNRTAAGLMHTFNAHAATDITGFGI |
PLGTQVAV..HQWLD.PE.WNKI..VV..E.VELAYQEAM.NMA.LNRTAAGLMHTFNAHAATDITGFGI | |
Retrocopy | PLGTQVAVNAHQWLDNPERWNKINMVVSREEVELAYQEAMFNMATLNRTAAGLMHTFNAHAATDITGFGI |
Parental | LGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIK |
LGH.QNLAKQQRNEVSFVIHNLP..AKMAA.SKA.G..FGL..GT..ETSGGLLICLPREQAARFC.EIK | |
Retrocopy | LGHSQNLAKQQRNEVSFVIHNLPIIAKMAAISKASGR-FGLLQGTSAETSGGLLICLPREQAARFCSEIK |
Parental | SPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQ |
S.KYGEGHQAWI.GIVEKGNRTARIIDKPR.IEV.P. | |
Retrocopy | SSKYGEGHQAWIVGIVEKGNRTARIIDKPRVIEVLPR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 26 .86 RPM | 39 .83 RPM |
SRP017611_kidney | 102 .03 RPM | 27 .41 RPM |
SRP017611_liver | 140 .21 RPM | 27 .19 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000009494 | 2 retrocopies | |
Felis catus | ENSFCAG00000003921 | 1 retrocopy |
retro_fcat_96 ,
|
Macropus eugenii | ENSMEUG00000012188 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021233 | 4 retrocopies | |
Mustela putorius furo | ENSMPUG00000000948 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012205 | 7 retrocopies | |
Pongo abelii | ENSPPYG00000002099 | 6 retrocopies | |
Rattus norvegicus | ENSRNOG00000018125 | 1 retrocopy |